Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1184 and Echvi_1185 are separated by 11 nucleotides Echvi_1185 and Echvi_1186 are separated by 225 nucleotides Echvi_1186 and Echvi_1187 are separated by 12 nucleotides Echvi_1187 and Echvi_1188 are separated by 16 nucleotides
Echvi_1184: Echvi_1184 - hypothetical protein, at 1,360,688 to 1,360,810
_1184
Echvi_1185: Echvi_1185 - hypothetical protein, at 1,360,822 to 1,361,322
_1185
Echvi_1186: Echvi_1186 - ribose 5-phosphate isomerase B, at 1,361,548 to 1,361,985
_1186
Echvi_1187: Echvi_1187 - Twin arginine targeting (Tat) protein translocase TatC, at 1,361,998 to 1,362,843
_1187
Echvi_1188: Echvi_1188 - Glycine/serine hydroxymethyltransferase, at 1,362,860 to 1,364,128
_1188
Position (kb)
1361
1362 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1360.561 kb on + strand at 1360.561 kb on + strand at 1360.562 kb on - strand at 1360.563 kb on + strand at 1360.563 kb on + strand at 1360.569 kb on + strand at 1360.569 kb on + strand at 1360.569 kb on + strand at 1360.570 kb on - strand at 1360.572 kb on + strand at 1360.572 kb on + strand at 1360.572 kb on + strand at 1360.585 kb on + strand at 1360.585 kb on + strand at 1360.585 kb on + strand at 1360.623 kb on + strand at 1360.623 kb on + strand at 1360.623 kb on + strand at 1360.624 kb on - strand at 1360.648 kb on + strand at 1360.649 kb on - strand at 1360.649 kb on - strand at 1360.694 kb on + strand at 1360.790 kb on + strand, within Echvi_1184 at 1360.795 kb on + strand, within Echvi_1184 at 1360.795 kb on + strand, within Echvi_1184 at 1360.795 kb on + strand, within Echvi_1184 at 1360.796 kb on - strand, within Echvi_1184 at 1360.796 kb on - strand, within Echvi_1184 at 1360.799 kb on - strand at 1360.815 kb on + strand at 1360.815 kb on + strand at 1360.816 kb on - strand at 1360.865 kb on + strand at 1360.879 kb on - strand, within Echvi_1185 at 1360.881 kb on + strand, within Echvi_1185 at 1360.912 kb on - strand, within Echvi_1185 at 1360.914 kb on + strand, within Echvi_1185 at 1360.914 kb on + strand, within Echvi_1185 at 1360.923 kb on + strand, within Echvi_1185 at 1360.939 kb on - strand, within Echvi_1185 at 1360.944 kb on + strand, within Echvi_1185 at 1360.944 kb on + strand, within Echvi_1185 at 1360.993 kb on + strand, within Echvi_1185 at 1361.038 kb on + strand, within Echvi_1185 at 1361.038 kb on + strand, within Echvi_1185 at 1361.052 kb on + strand, within Echvi_1185 at 1361.054 kb on + strand, within Echvi_1185 at 1361.059 kb on + strand, within Echvi_1185 at 1361.059 kb on + strand, within Echvi_1185 at 1361.060 kb on - strand, within Echvi_1185 at 1361.060 kb on - strand, within Echvi_1185 at 1361.073 kb on + strand, within Echvi_1185 at 1361.080 kb on + strand, within Echvi_1185 at 1361.081 kb on - strand, within Echvi_1185 at 1361.081 kb on - strand, within Echvi_1185 at 1361.083 kb on - strand, within Echvi_1185 at 1361.128 kb on + strand, within Echvi_1185 at 1361.129 kb on - strand, within Echvi_1185 at 1361.129 kb on - strand, within Echvi_1185 at 1361.141 kb on + strand, within Echvi_1185 at 1361.142 kb on - strand, within Echvi_1185 at 1361.142 kb on - strand, within Echvi_1185 at 1361.142 kb on - strand, within Echvi_1185 at 1361.144 kb on - strand, within Echvi_1185 at 1361.158 kb on - strand, within Echvi_1185 at 1361.231 kb on - strand, within Echvi_1185 at 1361.304 kb on - strand at 1361.304 kb on - strand at 1361.308 kb on - strand at 1361.466 kb on - strand at 1361.476 kb on + strand at 1361.498 kb on + strand at 1361.554 kb on - strand at 1361.565 kb on + strand at 1361.685 kb on + strand, within Echvi_1186 at 1361.989 kb on - strand at 1362.862 kb on - strand at 1362.865 kb on - strand at 1362.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,360,561 + -0.7 1,360,561 + -0.1 1,360,562 - +0.1 1,360,563 + -0.6 1,360,563 + -1.4 1,360,569 + +1.0 1,360,569 + +0.3 1,360,569 + -0.4 1,360,570 - +0.4 1,360,572 + -0.5 1,360,572 + +0.3 1,360,572 + -0.4 1,360,585 + +0.2 1,360,585 + +1.0 1,360,585 + -1.6 1,360,623 + -0.8 1,360,623 + +0.4 1,360,623 + -0.6 1,360,624 - +0.2 1,360,648 + -1.7 1,360,649 - -0.4 1,360,649 - -0.2 1,360,694 + +0.1 1,360,790 + Echvi_1184 0.83 -1.1 1,360,795 + Echvi_1184 0.87 -0.4 1,360,795 + Echvi_1184 0.87 -0.6 1,360,795 + Echvi_1184 0.87 +0.5 1,360,796 - Echvi_1184 0.88 +0.2 1,360,796 - Echvi_1184 0.88 +0.6 1,360,799 - -0.6 1,360,815 + +0.9 1,360,815 + +2.0 1,360,816 - -0.5 1,360,865 + -0.6 1,360,879 - Echvi_1185 0.11 +0.0 1,360,881 + Echvi_1185 0.12 +0.4 1,360,912 - Echvi_1185 0.18 +1.0 1,360,914 + Echvi_1185 0.18 +1.1 1,360,914 + Echvi_1185 0.18 +0.5 1,360,923 + Echvi_1185 0.20 -0.4 1,360,939 - Echvi_1185 0.23 +0.0 1,360,944 + Echvi_1185 0.24 +0.2 1,360,944 + Echvi_1185 0.24 -1.1 1,360,993 + Echvi_1185 0.34 -0.7 1,361,038 + Echvi_1185 0.43 -1.7 1,361,038 + Echvi_1185 0.43 +0.4 1,361,052 + Echvi_1185 0.46 -0.1 1,361,054 + Echvi_1185 0.46 -1.7 1,361,059 + Echvi_1185 0.47 +1.4 1,361,059 + Echvi_1185 0.47 +1.6 1,361,060 - Echvi_1185 0.48 -0.7 1,361,060 - Echvi_1185 0.48 +0.9 1,361,073 + Echvi_1185 0.50 +0.7 1,361,080 + Echvi_1185 0.51 +0.5 1,361,081 - Echvi_1185 0.52 -0.8 1,361,081 - Echvi_1185 0.52 -0.9 1,361,083 - Echvi_1185 0.52 -1.9 1,361,128 + Echvi_1185 0.61 -0.6 1,361,129 - Echvi_1185 0.61 -1.1 1,361,129 - Echvi_1185 0.61 -0.9 1,361,141 + Echvi_1185 0.64 -2.4 1,361,142 - Echvi_1185 0.64 +0.6 1,361,142 - Echvi_1185 0.64 +0.2 1,361,142 - Echvi_1185 0.64 +0.2 1,361,144 - Echvi_1185 0.64 -1.6 1,361,158 - Echvi_1185 0.67 -2.8 1,361,231 - Echvi_1185 0.82 +1.2 1,361,304 - -0.7 1,361,304 - -1.3 1,361,308 - -1.5 1,361,466 - -0.7 1,361,476 + +0.4 1,361,498 + -0.6 1,361,554 - +0.3 1,361,565 + -1.2 1,361,685 + Echvi_1186 0.31 -0.9 1,361,989 - -0.4 1,362,862 - +0.9 1,362,865 - +3.1 1,362,894 - -2.5
Or see this region's nucleotide sequence