Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_599 and PfGW456L13_600 overlap by 8 nucleotides PfGW456L13_600 and PfGW456L13_601 are separated by 37 nucleotides PfGW456L13_601 and PfGW456L13_602 are separated by 367 nucleotides
PfGW456L13_599 - Zinc ABC transporter, ATP-binding protein ZnuC, at 692,958 to 693,743
_599
PfGW456L13_600 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 693,736 to 694,524
_600
PfGW456L13_601 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 694,562 to 695,278
_601
PfGW456L13_602 - Methionine ABC transporter ATP-binding protein, at 695,646 to 696,653
_602
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 693.639 kb on + strand, within PfGW456L13_599 at 693.639 kb on + strand, within PfGW456L13_599 at 693.639 kb on + strand, within PfGW456L13_599 at 693.640 kb on - strand, within PfGW456L13_599 at 693.640 kb on - strand, within PfGW456L13_599 at 693.640 kb on - strand, within PfGW456L13_599 at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.725 kb on + strand at 693.726 kb on - strand at 693.726 kb on - strand at 693.754 kb on + strand at 693.755 kb on - strand at 693.832 kb on + strand, within PfGW456L13_600 at 693.832 kb on + strand, within PfGW456L13_600 at 693.832 kb on + strand, within PfGW456L13_600 at 694.034 kb on + strand, within PfGW456L13_600 at 694.034 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.037 kb on + strand, within PfGW456L13_600 at 694.038 kb on - strand, within PfGW456L13_600 at 694.038 kb on - strand, within PfGW456L13_600 at 694.038 kb on - strand, within PfGW456L13_600 at 694.038 kb on - strand, within PfGW456L13_600 at 694.075 kb on + strand, within PfGW456L13_600 at 694.075 kb on + strand, within PfGW456L13_600 at 694.076 kb on - strand, within PfGW456L13_600 at 694.076 kb on - strand, within PfGW456L13_600 at 694.076 kb on - strand, within PfGW456L13_600 at 694.076 kb on - strand, within PfGW456L13_600 at 694.076 kb on - strand, within PfGW456L13_600 at 694.162 kb on - strand, within PfGW456L13_600 at 694.271 kb on + strand, within PfGW456L13_600 at 694.271 kb on + strand, within PfGW456L13_600 at 694.272 kb on - strand, within PfGW456L13_600 at 694.401 kb on - strand, within PfGW456L13_600 at 694.409 kb on + strand, within PfGW456L13_600 at 694.410 kb on - strand, within PfGW456L13_600 at 694.485 kb on - strand at 694.522 kb on + strand at 694.522 kb on + strand at 694.522 kb on + strand at 694.522 kb on + strand at 694.523 kb on - strand at 694.548 kb on - strand at 694.548 kb on - strand at 694.583 kb on + strand at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.782 kb on - strand, within PfGW456L13_601 at 694.782 kb on - strand, within PfGW456L13_601 at 694.805 kb on + strand, within PfGW456L13_601 at 694.805 kb on + strand, within PfGW456L13_601 at 694.806 kb on - strand, within PfGW456L13_601 at 694.806 kb on - strand, within PfGW456L13_601 at 695.048 kb on - strand, within PfGW456L13_601 at 695.057 kb on - strand, within PfGW456L13_601 at 695.143 kb on + strand, within PfGW456L13_601 at 695.143 kb on + strand, within PfGW456L13_601 at 695.144 kb on - strand, within PfGW456L13_601 at 695.150 kb on + strand, within PfGW456L13_601 at 695.259 kb on + strand at 695.259 kb on + strand at 695.259 kb on + strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.269 kb on + strand at 695.270 kb on - strand at 695.270 kb on - strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.292 kb on - strand at 695.292 kb on - strand at 695.292 kb on - strand at 695.348 kb on + strand at 695.348 kb on + strand at 695.348 kb on + strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.353 kb on + strand at 695.353 kb on + strand at 695.353 kb on + strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.528 kb on - strand at 695.550 kb on - strand at 695.556 kb on + strand at 695.563 kb on + strand at 695.563 kb on + strand at 695.564 kb on - strand at 695.573 kb on + strand at 695.573 kb on + strand at 695.574 kb on - strand at 695.574 kb on - strand at 695.575 kb on + strand at 695.586 kb on + strand at 695.586 kb on + strand at 695.587 kb on - strand at 695.622 kb on - strand at 695.643 kb on + strand at 695.644 kb on - strand at 695.644 kb on - strand at 695.670 kb on - strand at 695.670 kb on - strand at 695.670 kb on - strand at 695.677 kb on - strand at 695.677 kb on - strand at 695.677 kb on - strand at 695.745 kb on + strand at 695.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 693,639 + PfGW456L13_599 0.87 +0.1 693,639 + PfGW456L13_599 0.87 -0.4 693,639 + PfGW456L13_599 0.87 -0.3 693,640 - PfGW456L13_599 0.87 +0.2 693,640 - PfGW456L13_599 0.87 -1.7 693,640 - PfGW456L13_599 0.87 -1.2 693,725 + +0.2 693,725 + +1.0 693,725 + +2.9 693,725 + -0.1 693,725 + +0.1 693,725 + +1.4 693,725 + -0.4 693,725 + +0.5 693,725 + +0.9 693,725 + +0.6 693,725 + +0.7 693,726 - +0.5 693,726 - -0.7 693,754 + -0.7 693,755 - -0.9 693,832 + PfGW456L13_600 0.12 +1.8 693,832 + PfGW456L13_600 0.12 -0.9 693,832 + PfGW456L13_600 0.12 -2.7 694,034 + PfGW456L13_600 0.38 +0.7 694,034 + PfGW456L13_600 0.38 +0.6 694,037 + PfGW456L13_600 0.38 -0.7 694,037 + PfGW456L13_600 0.38 -0.2 694,037 + PfGW456L13_600 0.38 +0.1 694,037 + PfGW456L13_600 0.38 +0.9 694,037 + PfGW456L13_600 0.38 +0.0 694,037 + PfGW456L13_600 0.38 -0.3 694,037 + PfGW456L13_600 0.38 +0.4 694,037 + PfGW456L13_600 0.38 -1.4 694,037 + PfGW456L13_600 0.38 -1.3 694,037 + PfGW456L13_600 0.38 -0.4 694,037 + PfGW456L13_600 0.38 +0.6 694,038 - PfGW456L13_600 0.38 -0.5 694,038 - PfGW456L13_600 0.38 +0.5 694,038 - PfGW456L13_600 0.38 -0.8 694,038 - PfGW456L13_600 0.38 -1.3 694,075 + PfGW456L13_600 0.43 +0.9 694,075 + PfGW456L13_600 0.43 -2.0 694,076 - PfGW456L13_600 0.43 +0.7 694,076 - PfGW456L13_600 0.43 -0.4 694,076 - PfGW456L13_600 0.43 -1.7 694,076 - PfGW456L13_600 0.43 +0.7 694,076 - PfGW456L13_600 0.43 +0.3 694,162 - PfGW456L13_600 0.54 +0.0 694,271 + PfGW456L13_600 0.68 +0.2 694,271 + PfGW456L13_600 0.68 +0.3 694,272 - PfGW456L13_600 0.68 -0.3 694,401 - PfGW456L13_600 0.84 +1.3 694,409 + PfGW456L13_600 0.85 -0.7 694,410 - PfGW456L13_600 0.85 -0.5 694,485 - -1.1 694,522 + +1.0 694,522 + +0.2 694,522 + -1.1 694,522 + +0.4 694,523 - -1.6 694,548 - -1.5 694,548 - -0.7 694,583 + -1.8 694,680 + PfGW456L13_601 0.16 -2.0 694,680 + PfGW456L13_601 0.16 -0.9 694,680 + PfGW456L13_601 0.16 +0.6 694,680 + PfGW456L13_601 0.16 +1.3 694,681 - PfGW456L13_601 0.17 -2.0 694,681 - PfGW456L13_601 0.17 -1.1 694,681 - PfGW456L13_601 0.17 -1.4 694,681 - PfGW456L13_601 0.17 -0.5 694,681 - PfGW456L13_601 0.17 +0.3 694,681 - PfGW456L13_601 0.17 -1.1 694,681 - PfGW456L13_601 0.17 -3.3 694,681 - PfGW456L13_601 0.17 -1.7 694,782 - PfGW456L13_601 0.31 -1.9 694,782 - PfGW456L13_601 0.31 -0.8 694,805 + PfGW456L13_601 0.34 -1.9 694,805 + PfGW456L13_601 0.34 -2.1 694,806 - PfGW456L13_601 0.34 -1.6 694,806 - PfGW456L13_601 0.34 -1.9 695,048 - PfGW456L13_601 0.68 -2.0 695,057 - PfGW456L13_601 0.69 -1.1 695,143 + PfGW456L13_601 0.81 -3.2 695,143 + PfGW456L13_601 0.81 -0.2 695,144 - PfGW456L13_601 0.81 -0.3 695,150 + PfGW456L13_601 0.82 -0.6 695,259 + +0.5 695,259 + -0.4 695,259 + -0.3 695,260 - -1.1 695,260 - -1.9 695,260 - -0.5 695,260 - -0.8 695,260 - -2.7 695,260 - -0.5 695,260 - -1.0 695,269 + -1.7 695,270 - -1.0 695,270 - -1.9 695,291 + -1.7 695,291 + +0.4 695,291 + -0.4 695,291 + +0.8 695,292 - -0.3 695,292 - -0.5 695,292 - +2.5 695,348 + +0.6 695,348 + +0.7 695,348 + +0.7 695,349 - +1.2 695,349 - -1.1 695,349 - +1.4 695,349 - -2.0 695,353 + -0.1 695,353 + +0.0 695,353 + -0.3 695,354 - -0.6 695,354 - +0.7 695,354 - -1.7 695,354 - +1.5 695,354 - -0.4 695,528 - -0.9 695,550 - -0.9 695,556 + +0.1 695,563 + -1.7 695,563 + +0.1 695,564 - -1.2 695,573 + -0.3 695,573 + +0.5 695,574 - -1.9 695,574 - -2.9 695,575 + -0.5 695,586 + +0.9 695,586 + -0.6 695,587 - -0.9 695,622 - -1.1 695,643 + +0.8 695,644 - -1.3 695,644 - -1.2 695,670 - -1.8 695,670 - -0.1 695,670 - -1.0 695,677 - -1.7 695,677 - -1.8 695,677 - +0.6 695,745 + +0.2 695,746 - +0.1
Or see this region's nucleotide sequence