Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4599

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4597 and PfGW456L13_4598 are separated by 99 nucleotidesPfGW456L13_4598 and PfGW456L13_4599 are separated by 217 nucleotidesPfGW456L13_4599 and PfGW456L13_4600 are separated by 170 nucleotides PfGW456L13_4597 - FIG00959308: hypothetical protein, at 5,131,246 to 5,131,407 _4597 PfGW456L13_4598 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 5,131,507 to 5,131,848 _4598 PfGW456L13_4599 - RNA polymerase associated protein RapA (EC 3.6.1.-), at 5,132,066 to 5,134,912 _4599 PfGW456L13_4600 - Major facilitator family transporter, at 5,135,083 to 5,136,432 _4600 Position (kb) 5132 5133 5134 5135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5131.139 kb on + strandat 5131.167 kb on - strandat 5131.438 kb on - strandat 5131.448 kb on - strandat 5131.471 kb on + strandat 5131.629 kb on + strand, within PfGW456L13_4598at 5131.629 kb on + strand, within PfGW456L13_4598at 5131.977 kb on + strandat 5131.977 kb on + strandat 5131.977 kb on + strandat 5131.977 kb on + strandat 5131.977 kb on + strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5131.978 kb on - strandat 5132.078 kb on + strandat 5132.319 kb on - strandat 5132.945 kb on + strand, within PfGW456L13_4599at 5132.946 kb on - strand, within PfGW456L13_4599at 5133.105 kb on - strand, within PfGW456L13_4599at 5133.377 kb on + strand, within PfGW456L13_4599at 5133.378 kb on - strand, within PfGW456L13_4599at 5133.659 kb on + strand, within PfGW456L13_4599at 5133.793 kb on + strand, within PfGW456L13_4599at 5133.794 kb on - strand, within PfGW456L13_4599at 5133.794 kb on - strand, within PfGW456L13_4599at 5133.887 kb on + strand, within PfGW456L13_4599at 5134.163 kb on + strand, within PfGW456L13_4599at 5134.163 kb on + strand, within PfGW456L13_4599at 5134.163 kb on + strand, within PfGW456L13_4599at 5134.164 kb on - strand, within PfGW456L13_4599at 5134.164 kb on - strand, within PfGW456L13_4599at 5134.164 kb on - strand, within PfGW456L13_4599at 5134.299 kb on - strand, within PfGW456L13_4599at 5134.299 kb on - strand, within PfGW456L13_4599at 5134.307 kb on - strand, within PfGW456L13_4599at 5134.469 kb on + strand, within PfGW456L13_4599at 5134.469 kb on + strand, within PfGW456L13_4599at 5134.469 kb on + strand, within PfGW456L13_4599at 5134.469 kb on + strand, within PfGW456L13_4599at 5134.469 kb on + strand, within PfGW456L13_4599at 5134.470 kb on - strand, within PfGW456L13_4599at 5134.470 kb on - strand, within PfGW456L13_4599at 5134.515 kb on - strand, within PfGW456L13_4599at 5134.910 kb on + strandat 5134.930 kb on + strandat 5134.971 kb on - strandat 5134.984 kb on + strandat 5134.985 kb on - strandat 5135.043 kb on + strandat 5135.043 kb on - strandat 5135.044 kb on - strandat 5135.044 kb on - strandat 5135.051 kb on - strandat 5135.051 kb on - strandat 5135.051 kb on - strandat 5135.219 kb on + strand, within PfGW456L13_4600at 5135.219 kb on + strand, within PfGW456L13_4600at 5135.219 kb on + strand, within PfGW456L13_4600at 5135.219 kb on + strand, within PfGW456L13_4600at 5135.220 kb on - strand, within PfGW456L13_4600at 5135.220 kb on - strand, within PfGW456L13_4600at 5135.220 kb on - strand, within PfGW456L13_4600at 5135.220 kb on - strand, within PfGW456L13_4600at 5135.248 kb on - strand, within PfGW456L13_4600at 5135.354 kb on + strand, within PfGW456L13_4600at 5135.354 kb on + strand, within PfGW456L13_4600at 5135.355 kb on - strand, within PfGW456L13_4600at 5135.426 kb on + strand, within PfGW456L13_4600at 5135.436 kb on + strand, within PfGW456L13_4600at 5135.437 kb on - strand, within PfGW456L13_4600at 5135.437 kb on - strand, within PfGW456L13_4600at 5135.438 kb on + strand, within PfGW456L13_4600at 5135.438 kb on + strandat 5135.438 kb on + strand, within PfGW456L13_4600at 5135.439 kb on - strand, within PfGW456L13_4600at 5135.439 kb on - strand, within PfGW456L13_4600at 5135.439 kb on - strand, within PfGW456L13_4600at 5135.447 kb on + strand, within PfGW456L13_4600at 5135.447 kb on + strand, within PfGW456L13_4600at 5135.448 kb on - strand, within PfGW456L13_4600at 5135.467 kb on - strand, within PfGW456L13_4600at 5135.474 kb on - strand, within PfGW456L13_4600at 5135.474 kb on - strand, within PfGW456L13_4600at 5135.653 kb on - strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.696 kb on + strand, within PfGW456L13_4600at 5135.697 kb on - strand, within PfGW456L13_4600at 5135.697 kb on - strand, within PfGW456L13_4600at 5135.697 kb on - strand, within PfGW456L13_4600at 5135.697 kb on - strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.735 kb on + strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600at 5135.736 kb on - strand, within PfGW456L13_4600

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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5,131,139 + +0.2
5,131,167 - +1.1
5,131,438 - -0.6
5,131,448 - -0.9
5,131,471 + +1.7
5,131,629 + PfGW456L13_4598 0.36 +0.8
5,131,629 + PfGW456L13_4598 0.36 -0.2
5,131,977 + +0.3
5,131,977 + +0.1
5,131,977 + +0.2
5,131,977 + -0.5
5,131,977 + +0.5
5,131,978 - +0.1
5,131,978 - -0.8
5,131,978 - +0.0
5,131,978 - -0.0
5,131,978 - -0.5
5,131,978 - +0.4
5,131,978 - +0.4
5,131,978 - -0.5
5,132,078 + -0.0
5,132,319 - -1.6
5,132,945 + PfGW456L13_4599 0.31 -2.1
5,132,946 - PfGW456L13_4599 0.31 -0.3
5,133,105 - PfGW456L13_4599 0.36 +0.7
5,133,377 + PfGW456L13_4599 0.46 +0.7
5,133,378 - PfGW456L13_4599 0.46 -3.5
5,133,659 + PfGW456L13_4599 0.56 -0.5
5,133,793 + PfGW456L13_4599 0.61 -0.3
5,133,794 - PfGW456L13_4599 0.61 -0.3
5,133,794 - PfGW456L13_4599 0.61 -2.6
5,133,887 + PfGW456L13_4599 0.64 -0.9
5,134,163 + PfGW456L13_4599 0.74 -0.3
5,134,163 + PfGW456L13_4599 0.74 -0.7
5,134,163 + PfGW456L13_4599 0.74 +0.5
5,134,164 - PfGW456L13_4599 0.74 -0.9
5,134,164 - PfGW456L13_4599 0.74 -1.4
5,134,164 - PfGW456L13_4599 0.74 -1.9
5,134,299 - PfGW456L13_4599 0.78 -0.0
5,134,299 - PfGW456L13_4599 0.78 -2.7
5,134,307 - PfGW456L13_4599 0.79 -1.5
5,134,469 + PfGW456L13_4599 0.84 -1.9
5,134,469 + PfGW456L13_4599 0.84 +0.7
5,134,469 + PfGW456L13_4599 0.84 -1.0
5,134,469 + PfGW456L13_4599 0.84 -0.8
5,134,469 + PfGW456L13_4599 0.84 -0.8
5,134,470 - PfGW456L13_4599 0.84 -1.6
5,134,470 - PfGW456L13_4599 0.84 -0.5
5,134,515 - PfGW456L13_4599 0.86 -0.3
5,134,910 + -0.9
5,134,930 + -0.8
5,134,971 - +0.3
5,134,984 + -1.6
5,134,985 - -0.0
5,135,043 + -0.9
5,135,043 - -1.1
5,135,044 - +0.5
5,135,044 - +0.1
5,135,051 - +0.7
5,135,051 - +0.3
5,135,051 - +0.2
5,135,219 + PfGW456L13_4600 0.10 +0.0
5,135,219 + PfGW456L13_4600 0.10 +0.4
5,135,219 + PfGW456L13_4600 0.10 -0.6
5,135,219 + PfGW456L13_4600 0.10 -1.1
5,135,220 - PfGW456L13_4600 0.10 +0.8
5,135,220 - PfGW456L13_4600 0.10 +0.3
5,135,220 - PfGW456L13_4600 0.10 +0.1
5,135,220 - PfGW456L13_4600 0.10 -0.5
5,135,248 - PfGW456L13_4600 0.12 +0.5
5,135,354 + PfGW456L13_4600 0.20 -0.1
5,135,354 + PfGW456L13_4600 0.20 -0.0
5,135,355 - PfGW456L13_4600 0.20 -0.1
5,135,426 + PfGW456L13_4600 0.25 -0.7
5,135,436 + PfGW456L13_4600 0.26 -0.8
5,135,437 - PfGW456L13_4600 0.26 +0.4
5,135,437 - PfGW456L13_4600 0.26 -1.3
5,135,438 + PfGW456L13_4600 0.26 -1.4
5,135,438 + -0.0
5,135,438 + PfGW456L13_4600 0.26 -0.0
5,135,439 - PfGW456L13_4600 0.26 +0.5
5,135,439 - PfGW456L13_4600 0.26 -0.6
5,135,439 - PfGW456L13_4600 0.26 +0.4
5,135,447 + PfGW456L13_4600 0.27 +2.3
5,135,447 + PfGW456L13_4600 0.27 -0.3
5,135,448 - PfGW456L13_4600 0.27 -0.6
5,135,467 - PfGW456L13_4600 0.28 +0.3
5,135,474 - PfGW456L13_4600 0.29 +0.4
5,135,474 - PfGW456L13_4600 0.29 +0.0
5,135,653 - PfGW456L13_4600 0.42 +0.7
5,135,696 + PfGW456L13_4600 0.45 -0.1
5,135,696 + PfGW456L13_4600 0.45 -1.2
5,135,696 + PfGW456L13_4600 0.45 -0.2
5,135,696 + PfGW456L13_4600 0.45 -0.3
5,135,696 + PfGW456L13_4600 0.45 -0.2
5,135,696 + PfGW456L13_4600 0.45 -0.9
5,135,696 + PfGW456L13_4600 0.45 -0.8
5,135,697 - PfGW456L13_4600 0.45 +0.2
5,135,697 - PfGW456L13_4600 0.45 +1.0
5,135,697 - PfGW456L13_4600 0.45 -0.8
5,135,697 - PfGW456L13_4600 0.45 +0.2
5,135,735 + PfGW456L13_4600 0.48 +0.2
5,135,735 + PfGW456L13_4600 0.48 +0.3
5,135,735 + PfGW456L13_4600 0.48 -1.3
5,135,735 + PfGW456L13_4600 0.48 +0.2
5,135,735 + PfGW456L13_4600 0.48 -0.1
5,135,735 + PfGW456L13_4600 0.48 +1.3
5,135,735 + PfGW456L13_4600 0.48 +0.1
5,135,735 + PfGW456L13_4600 0.48 +1.7
5,135,735 + PfGW456L13_4600 0.48 +0.3
5,135,735 + PfGW456L13_4600 0.48 -1.3
5,135,735 + PfGW456L13_4600 0.48 -1.0
5,135,735 + PfGW456L13_4600 0.48 -0.0
5,135,735 + PfGW456L13_4600 0.48 +0.7
5,135,735 + PfGW456L13_4600 0.48 +0.7
5,135,735 + PfGW456L13_4600 0.48 +0.4
5,135,735 + PfGW456L13_4600 0.48 +1.4
5,135,735 + PfGW456L13_4600 0.48 +0.1
5,135,735 + PfGW456L13_4600 0.48 -0.6
5,135,735 + PfGW456L13_4600 0.48 +1.6
5,135,735 + PfGW456L13_4600 0.48 +1.5
5,135,736 - PfGW456L13_4600 0.48 +0.2
5,135,736 - PfGW456L13_4600 0.48 -0.3
5,135,736 - PfGW456L13_4600 0.48 +0.5
5,135,736 - PfGW456L13_4600 0.48 +0.2
5,135,736 - PfGW456L13_4600 0.48 -0.6
5,135,736 - PfGW456L13_4600 0.48 +0.0
5,135,736 - PfGW456L13_4600 0.48 -0.3
5,135,736 - PfGW456L13_4600 0.48 +0.4
5,135,736 - PfGW456L13_4600 0.48 +3.2
5,135,736 - PfGW456L13_4600 0.48 -0.5
5,135,736 - PfGW456L13_4600 0.48 -0.3
5,135,736 - PfGW456L13_4600 0.48 +0.4
5,135,736 - PfGW456L13_4600 0.48 +0.9
5,135,736 - PfGW456L13_4600 0.48 +0.1
5,135,736 - PfGW456L13_4600 0.48 +0.8
5,135,736 - PfGW456L13_4600 0.48 +0.8
5,135,736 - PfGW456L13_4600 0.48 +1.2
5,135,736 - PfGW456L13_4600 0.48 +0.2
5,135,736 - PfGW456L13_4600 0.48 +0.7

Or see this region's nucleotide sequence