Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS06325 and ABZR86_RS06330 are separated by 79 nucleotides ABZR86_RS06330 and ABZR86_RS06335 are separated by 21 nucleotides ABZR86_RS06335 and ABZR86_RS06340 are separated by 5 nucleotides ABZR86_RS06340 and ABZR86_RS06345 overlap by 4 nucleotides ABZR86_RS06345 and ABZR86_RS06350 are separated by 82 nucleotides
ABZR86_RS06325: ABZR86_RS06325 - succinate dehydrogenase assembly factor 2, at 1,411,534 to 1,411,782
_RS06325
ABZR86_RS06330: ABZR86_RS06330 - succinate dehydrogenase iron-sulfur subunit, at 1,411,862 to 1,412,647
_RS06330
ABZR86_RS06335: ABZR86_RS06335 - succinate dehydrogenase flavoprotein subunit, at 1,412,669 to 1,414,456
_RS06335
ABZR86_RS06340: ABZR86_RS06340 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,414,462 to 1,414,857
_RS06340
ABZR86_RS06345: ABZR86_RS06345 - succinate dehydrogenase, cytochrome b556 subunit, at 1,414,854 to 1,415,246
_RS06345
ABZR86_RS06350: ABZR86_RS06350 - DUF1674 domain-containing protein, at 1,415,329 to 1,415,433
_RS06350
Position (kb) 1412
1413
1414
1415 Strain fitness (log2 ratio) -1
0
1 at 1415.273 kb on - strand at 1415.273 kb on - strand at 1415.273 kb on - strand at 1415.273 kb on - strand at 1415.273 kb on - strand at 1415.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 1,415,273 - -0.1 1,415,273 - +0.6 1,415,273 - +0.3 1,415,273 - +0.1 1,415,273 - -1.1 1,415,273 - +0.1
Or see this region's nucleotide sequence