Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1310

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1308 and Shewana3_1309 are separated by 5 nucleotidesShewana3_1309 and Shewana3_1310 are separated by 36 nucleotidesShewana3_1310 and Shewana3_1311 overlap by 4 nucleotides Shewana3_1308: Shewana3_1308 - GCN5-related N-acetyltransferase (RefSeq), at 1,522,536 to 1,524,113 _1308 Shewana3_1309: Shewana3_1309 - acylneuraminate cytidylyltransferase (RefSeq), at 1,524,119 to 1,524,835 _1309 Shewana3_1310: Shewana3_1310 - hypothetical protein (RefSeq), at 1,524,872 to 1,525,150 _1310 Shewana3_1311: Shewana3_1311 - hypothetical protein (RefSeq), at 1,525,147 to 1,526,442 _1311 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1at 1523.884 kb on + strand, within Shewana3_1308at 1523.904 kb on + strand, within Shewana3_1308at 1524.006 kb on - strandat 1524.016 kb on - strandat 1524.162 kb on + strandat 1524.201 kb on + strand, within Shewana3_1309at 1524.338 kb on - strand, within Shewana3_1309at 1524.338 kb on - strand, within Shewana3_1309at 1524.493 kb on - strand, within Shewana3_1309at 1524.653 kb on + strand, within Shewana3_1309at 1524.853 kb on - strandat 1524.959 kb on - strand, within Shewana3_1310at 1525.039 kb on - strand, within Shewana3_1310at 1525.101 kb on + strand, within Shewana3_1310at 1525.326 kb on + strand, within Shewana3_1311at 1525.336 kb on - strand, within Shewana3_1311at 1525.463 kb on - strand, within Shewana3_1311at 1525.538 kb on + strand, within Shewana3_1311at 1525.575 kb on + strand, within Shewana3_1311at 1525.665 kb on - strand, within Shewana3_1311at 1525.718 kb on + strand, within Shewana3_1311at 1525.719 kb on - strand, within Shewana3_1311at 1525.804 kb on - strand, within Shewana3_1311at 1525.924 kb on - strand, within Shewana3_1311at 1525.991 kb on + strand, within Shewana3_1311at 1526.021 kb on + strand, within Shewana3_1311at 1526.029 kb on - strand, within Shewana3_1311at 1526.097 kb on + strand, within Shewana3_1311at 1526.110 kb on - strand, within Shewana3_1311

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,523,884 + Shewana3_1308 0.85 -1.0
1,523,904 + Shewana3_1308 0.87 +1.6
1,524,006 - -0.4
1,524,016 - -0.4
1,524,162 + -3.0
1,524,201 + Shewana3_1309 0.11 -0.5
1,524,338 - Shewana3_1309 0.31 +0.3
1,524,338 - Shewana3_1309 0.31 +1.5
1,524,493 - Shewana3_1309 0.52 -0.8
1,524,653 + Shewana3_1309 0.74 -0.8
1,524,853 - +0.0
1,524,959 - Shewana3_1310 0.31 -0.7
1,525,039 - Shewana3_1310 0.60 -1.0
1,525,101 + Shewana3_1310 0.82 -3.1
1,525,326 + Shewana3_1311 0.14 -0.4
1,525,336 - Shewana3_1311 0.15 -1.4
1,525,463 - Shewana3_1311 0.24 +0.9
1,525,538 + Shewana3_1311 0.30 -1.0
1,525,575 + Shewana3_1311 0.33 -1.8
1,525,665 - Shewana3_1311 0.40 +0.6
1,525,718 + Shewana3_1311 0.44 -2.1
1,525,719 - Shewana3_1311 0.44 +0.6
1,525,804 - Shewana3_1311 0.51 -0.1
1,525,924 - Shewana3_1311 0.60 +0.2
1,525,991 + Shewana3_1311 0.65 -1.5
1,526,021 + Shewana3_1311 0.67 -0.4
1,526,029 - Shewana3_1311 0.68 +0.0
1,526,097 + Shewana3_1311 0.73 -1.0
1,526,110 - Shewana3_1311 0.74 +0.3

Or see this region's nucleotide sequence