Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1308 and Shewana3_1309 are separated by 5 nucleotides Shewana3_1309 and Shewana3_1310 are separated by 36 nucleotides Shewana3_1310 and Shewana3_1311 overlap by 4 nucleotides
Shewana3_1308: Shewana3_1308 - GCN5-related N-acetyltransferase (RefSeq), at 1,522,536 to 1,524,113
_1308
Shewana3_1309: Shewana3_1309 - acylneuraminate cytidylyltransferase (RefSeq), at 1,524,119 to 1,524,835
_1309
Shewana3_1310: Shewana3_1310 - hypothetical protein (RefSeq), at 1,524,872 to 1,525,150
_1310
Shewana3_1311: Shewana3_1311 - hypothetical protein (RefSeq), at 1,525,147 to 1,526,442
_1311
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1523.884 kb on + strand, within Shewana3_1308 at 1523.904 kb on + strand, within Shewana3_1308 at 1524.006 kb on - strand at 1524.016 kb on - strand at 1524.162 kb on + strand at 1524.201 kb on + strand, within Shewana3_1309 at 1524.338 kb on - strand, within Shewana3_1309 at 1524.338 kb on - strand, within Shewana3_1309 at 1524.493 kb on - strand, within Shewana3_1309 at 1524.653 kb on + strand, within Shewana3_1309 at 1524.853 kb on - strand at 1524.959 kb on - strand, within Shewana3_1310 at 1525.039 kb on - strand, within Shewana3_1310 at 1525.101 kb on + strand, within Shewana3_1310 at 1525.326 kb on + strand, within Shewana3_1311 at 1525.336 kb on - strand, within Shewana3_1311 at 1525.463 kb on - strand, within Shewana3_1311 at 1525.538 kb on + strand, within Shewana3_1311 at 1525.575 kb on + strand, within Shewana3_1311 at 1525.665 kb on - strand, within Shewana3_1311 at 1525.718 kb on + strand, within Shewana3_1311 at 1525.719 kb on - strand, within Shewana3_1311 at 1525.804 kb on - strand, within Shewana3_1311 at 1525.924 kb on - strand, within Shewana3_1311 at 1525.991 kb on + strand, within Shewana3_1311 at 1526.021 kb on + strand, within Shewana3_1311 at 1526.029 kb on - strand, within Shewana3_1311 at 1526.097 kb on + strand, within Shewana3_1311 at 1526.110 kb on - strand, within Shewana3_1311
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,523,884 + Shewana3_1308 0.85 -1.0 1,523,904 + Shewana3_1308 0.87 +1.6 1,524,006 - -0.4 1,524,016 - -0.4 1,524,162 + -3.0 1,524,201 + Shewana3_1309 0.11 -0.5 1,524,338 - Shewana3_1309 0.31 +0.3 1,524,338 - Shewana3_1309 0.31 +1.5 1,524,493 - Shewana3_1309 0.52 -0.8 1,524,653 + Shewana3_1309 0.74 -0.8 1,524,853 - +0.0 1,524,959 - Shewana3_1310 0.31 -0.7 1,525,039 - Shewana3_1310 0.60 -1.0 1,525,101 + Shewana3_1310 0.82 -3.1 1,525,326 + Shewana3_1311 0.14 -0.4 1,525,336 - Shewana3_1311 0.15 -1.4 1,525,463 - Shewana3_1311 0.24 +0.9 1,525,538 + Shewana3_1311 0.30 -1.0 1,525,575 + Shewana3_1311 0.33 -1.8 1,525,665 - Shewana3_1311 0.40 +0.6 1,525,718 + Shewana3_1311 0.44 -2.1 1,525,719 - Shewana3_1311 0.44 +0.6 1,525,804 - Shewana3_1311 0.51 -0.1 1,525,924 - Shewana3_1311 0.60 +0.2 1,525,991 + Shewana3_1311 0.65 -1.5 1,526,021 + Shewana3_1311 0.67 -0.4 1,526,029 - Shewana3_1311 0.68 +0.0 1,526,097 + Shewana3_1311 0.73 -1.0 1,526,110 - Shewana3_1311 0.74 +0.3
Or see this region's nucleotide sequence