Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21305 and ABZR86_RS21310 are separated by 61 nucleotides ABZR86_RS21310 and ABZR86_RS21315 are separated by 83 nucleotides ABZR86_RS21315 and ABZR86_RS21320 are separated by 3 nucleotides ABZR86_RS21320 and ABZR86_RS21325 overlap by 4 nucleotides
ABZR86_RS21305: ABZR86_RS21305 - copper chaperone PCu(A)C, at 227,273 to 227,743
_RS21305
ABZR86_RS21310: ABZR86_RS21310 - cytochrome c oxidase assembly protein, at 227,805 to 228,659
_RS21310
ABZR86_RS21315: ABZR86_RS21315 - GldG family protein, at 228,743 to 230,638
_RS21315
ABZR86_RS21320: ABZR86_RS21320 - ABC transporter permease subunit, at 230,642 to 231,376
_RS21320
ABZR86_RS21325: ABZR86_RS21325 - ABC transporter ATP-binding protein, at 231,373 to 232,326
_RS21325
Position (kb) 228
229
230
231 Strain fitness (log2 ratio) -2
-1
0
1 at 227.746 kb on + strand at 227.746 kb on + strand at 227.747 kb on - strand at 227.747 kb on - strand at 227.779 kb on + strand at 227.779 kb on + strand at 227.780 kb on - strand at 227.816 kb on + strand at 227.816 kb on + strand at 227.816 kb on + strand at 227.816 kb on + strand at 227.817 kb on - strand at 227.817 kb on - strand at 227.817 kb on - strand at 228.145 kb on + strand, within ABZR86_RS21310 at 228.146 kb on - strand, within ABZR86_RS21310 at 228.469 kb on + strand, within ABZR86_RS21310 at 228.470 kb on - strand, within ABZR86_RS21310 at 228.472 kb on + strand, within ABZR86_RS21310 at 228.472 kb on + strand, within ABZR86_RS21310 at 228.481 kb on + strand, within ABZR86_RS21310 at 228.481 kb on + strand, within ABZR86_RS21310 at 228.481 kb on + strand, within ABZR86_RS21310 at 228.481 kb on + strand, within ABZR86_RS21310 at 228.481 kb on + strand, within ABZR86_RS21310 at 228.482 kb on - strand, within ABZR86_RS21310 at 228.499 kb on + strand, within ABZR86_RS21310 at 228.499 kb on + strand, within ABZR86_RS21310 at 228.499 kb on + strand, within ABZR86_RS21310 at 228.499 kb on + strand, within ABZR86_RS21310 at 228.500 kb on - strand, within ABZR86_RS21310 at 228.500 kb on - strand, within ABZR86_RS21310 at 228.500 kb on - strand, within ABZR86_RS21310 at 228.574 kb on + strand at 228.574 kb on + strand at 228.574 kb on + strand at 228.575 kb on - strand at 228.575 kb on - strand at 228.575 kb on - strand at 228.680 kb on - strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.698 kb on - strand at 228.698 kb on - strand at 228.698 kb on - strand at 228.698 kb on - strand at 228.698 kb on - strand at 228.698 kb on - strand at 228.783 kb on + strand at 229.236 kb on + strand, within ABZR86_RS21315 at 229.317 kb on + strand, within ABZR86_RS21315 at 229.318 kb on - strand, within ABZR86_RS21315 at 229.386 kb on + strand, within ABZR86_RS21315 at 229.386 kb on + strand, within ABZR86_RS21315 at 229.387 kb on - strand, within ABZR86_RS21315 at 229.387 kb on - strand, within ABZR86_RS21315 at 229.408 kb on - strand, within ABZR86_RS21315 at 229.688 kb on + strand, within ABZR86_RS21315 at 229.846 kb on - strand, within ABZR86_RS21315 at 229.846 kb on - strand, within ABZR86_RS21315 at 230.079 kb on + strand, within ABZR86_RS21315 at 230.079 kb on + strand, within ABZR86_RS21315 at 230.080 kb on - strand, within ABZR86_RS21315 at 230.080 kb on - strand, within ABZR86_RS21315 at 230.388 kb on + strand, within ABZR86_RS21315 at 230.389 kb on - strand, within ABZR86_RS21315 at 230.389 kb on - strand, within ABZR86_RS21315 at 230.389 kb on - strand, within ABZR86_RS21315 at 230.433 kb on + strand, within ABZR86_RS21315 at 230.433 kb on + strand, within ABZR86_RS21315 at 230.433 kb on + strand, within ABZR86_RS21315 at 230.434 kb on - strand, within ABZR86_RS21315 at 230.499 kb on + strand at 230.500 kb on - strand at 230.500 kb on - strand at 230.500 kb on - strand at 230.500 kb on - strand at 230.712 kb on + strand at 230.712 kb on + strand at 230.712 kb on + strand at 230.712 kb on + strand at 230.712 kb on + strand at 230.713 kb on - strand at 230.713 kb on - strand at 230.971 kb on - strand, within ABZR86_RS21320 at 231.009 kb on + strand, within ABZR86_RS21320 at 231.009 kb on + strand, within ABZR86_RS21320 at 231.010 kb on - strand, within ABZR86_RS21320 at 231.010 kb on - strand, within ABZR86_RS21320 at 231.010 kb on - strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.195 kb on + strand, within ABZR86_RS21320 at 231.196 kb on - strand, within ABZR86_RS21320 at 231.249 kb on + strand, within ABZR86_RS21320 at 231.265 kb on - strand, within ABZR86_RS21320 at 231.265 kb on - strand, within ABZR86_RS21320 at 231.265 kb on - strand, within ABZR86_RS21320 at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.308 kb on + strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.309 kb on - strand at 231.312 kb on + strand at 231.312 kb on + strand at 231.312 kb on + strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.313 kb on - strand at 231.333 kb on + strand at 231.333 kb on + strand at 231.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 227,746 + +0.2 227,746 + +0.2 227,747 - +0.2 227,747 - +0.2 227,779 + -0.2 227,779 + +0.1 227,780 - +0.6 227,816 + +0.1 227,816 + -0.1 227,816 + -0.3 227,816 + +0.3 227,817 - +0.2 227,817 - -0.6 227,817 - -0.1 228,145 + ABZR86_RS21310 0.40 -0.4 228,146 - ABZR86_RS21310 0.40 -0.9 228,469 + ABZR86_RS21310 0.78 -0.2 228,470 - ABZR86_RS21310 0.78 +0.1 228,472 + ABZR86_RS21310 0.78 +0.8 228,472 + ABZR86_RS21310 0.78 +0.3 228,481 + ABZR86_RS21310 0.79 -0.8 228,481 + ABZR86_RS21310 0.79 -0.6 228,481 + ABZR86_RS21310 0.79 +0.4 228,481 + ABZR86_RS21310 0.79 +0.2 228,481 + ABZR86_RS21310 0.79 -0.4 228,482 - ABZR86_RS21310 0.79 +0.4 228,499 + ABZR86_RS21310 0.81 -0.1 228,499 + ABZR86_RS21310 0.81 -0.1 228,499 + ABZR86_RS21310 0.81 -0.4 228,499 + ABZR86_RS21310 0.81 +0.2 228,500 - ABZR86_RS21310 0.81 +0.2 228,500 - ABZR86_RS21310 0.81 -0.7 228,500 - ABZR86_RS21310 0.81 -0.2 228,574 + +0.3 228,574 + +0.2 228,574 + -0.6 228,575 - +0.9 228,575 - +1.0 228,575 - +0.9 228,680 - +0.0 228,697 + -0.2 228,697 + -0.2 228,697 + +0.2 228,698 - -0.7 228,698 - +0.1 228,698 - +0.4 228,698 - -1.2 228,698 - -1.3 228,698 - +0.2 228,783 + -0.6 229,236 + ABZR86_RS21315 0.26 -1.3 229,317 + ABZR86_RS21315 0.30 +0.1 229,318 - ABZR86_RS21315 0.30 -0.3 229,386 + ABZR86_RS21315 0.34 -0.6 229,386 + ABZR86_RS21315 0.34 -1.1 229,387 - ABZR86_RS21315 0.34 -1.2 229,387 - ABZR86_RS21315 0.34 -2.3 229,408 - ABZR86_RS21315 0.35 -0.5 229,688 + ABZR86_RS21315 0.50 -0.8 229,846 - ABZR86_RS21315 0.58 -1.1 229,846 - ABZR86_RS21315 0.58 -0.3 230,079 + ABZR86_RS21315 0.70 -0.5 230,079 + ABZR86_RS21315 0.70 -0.0 230,080 - ABZR86_RS21315 0.71 -0.3 230,080 - ABZR86_RS21315 0.71 -0.8 230,388 + ABZR86_RS21315 0.87 -0.3 230,389 - ABZR86_RS21315 0.87 -0.7 230,389 - ABZR86_RS21315 0.87 -0.9 230,389 - ABZR86_RS21315 0.87 -0.9 230,433 + ABZR86_RS21315 0.89 -0.8 230,433 + ABZR86_RS21315 0.89 +0.9 230,433 + ABZR86_RS21315 0.89 -0.2 230,434 - ABZR86_RS21315 0.89 -0.2 230,499 + -1.2 230,500 - +0.5 230,500 - -0.8 230,500 - -0.3 230,500 - -0.9 230,712 + -1.8 230,712 + -0.2 230,712 + -1.0 230,712 + +0.1 230,712 + +0.0 230,713 - -1.1 230,713 - -0.4 230,971 - ABZR86_RS21320 0.45 -0.8 231,009 + ABZR86_RS21320 0.50 -1.0 231,009 + ABZR86_RS21320 0.50 -1.0 231,010 - ABZR86_RS21320 0.50 -0.2 231,010 - ABZR86_RS21320 0.50 -1.3 231,010 - ABZR86_RS21320 0.50 -0.6 231,195 + ABZR86_RS21320 0.75 -1.3 231,195 + ABZR86_RS21320 0.75 -1.1 231,195 + ABZR86_RS21320 0.75 -0.7 231,195 + ABZR86_RS21320 0.75 -1.8 231,195 + ABZR86_RS21320 0.75 +0.4 231,195 + ABZR86_RS21320 0.75 -0.7 231,196 - ABZR86_RS21320 0.75 +0.2 231,249 + ABZR86_RS21320 0.83 -1.4 231,265 - ABZR86_RS21320 0.85 -1.2 231,265 - ABZR86_RS21320 0.85 -1.0 231,265 - ABZR86_RS21320 0.85 -0.6 231,308 + -0.4 231,308 + -1.2 231,308 + -0.9 231,308 + -0.5 231,308 + -1.8 231,308 + -0.6 231,308 + -0.4 231,308 + -0.3 231,308 + -1.5 231,308 + -0.6 231,308 + -1.2 231,308 + -0.8 231,308 + -0.4 231,309 - -0.6 231,309 - -0.6 231,309 - +0.5 231,309 - -0.4 231,309 - -0.4 231,309 - -0.8 231,309 - -0.6 231,309 - -0.4 231,309 - -0.6 231,309 - +0.5 231,309 - -0.9 231,312 + -1.6 231,312 + -0.8 231,312 + -0.6 231,313 - +0.3 231,313 - -1.0 231,313 - -0.3 231,313 - -1.0 231,313 - -0.8 231,313 - -0.1 231,313 - -0.8 231,333 + -0.6 231,333 + -1.7 231,334 - -0.4
Or see this region's nucleotide sequence