Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18590 and ABZR86_RS18595 overlap by 4 nucleotides ABZR86_RS18595 and ABZR86_RS18600 overlap by 4 nucleotides ABZR86_RS18600 and ABZR86_RS18605 are separated by 68 nucleotides ABZR86_RS18605 and ABZR86_RS18610 are separated by 105 nucleotides
ABZR86_RS18590: ABZR86_RS18590 - YjbF family lipoprotein, at 142,526 to 143,140
_RS18590
ABZR86_RS18595: ABZR86_RS18595 - capsule biosynthesis GfcC family protein, at 143,137 to 143,913
_RS18595
ABZR86_RS18600: ABZR86_RS18600 - YjbH domain-containing protein, at 143,910 to 146,078
_RS18600
ABZR86_RS18605: ABZR86_RS18605 - thiol peroxidase, at 146,147 to 146,644
_RS18605
ABZR86_RS18610: ABZR86_RS18610 - group III truncated hemoglobin, at 146,750 to 147,166
_RS18610
Position (kb) 143
144
145
146
147 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 142.979 kb on + strand, within ABZR86_RS18590 at 142.992 kb on + strand, within ABZR86_RS18590 at 142.993 kb on - strand, within ABZR86_RS18590 at 143.030 kb on + strand, within ABZR86_RS18590 at 143.308 kb on + strand, within ABZR86_RS18595 at 143.309 kb on - strand, within ABZR86_RS18595 at 143.380 kb on + strand, within ABZR86_RS18595 at 143.380 kb on + strand, within ABZR86_RS18595 at 143.380 kb on + strand, within ABZR86_RS18595 at 143.380 kb on + strand, within ABZR86_RS18595 at 143.380 kb on + strand, within ABZR86_RS18595 at 143.381 kb on - strand, within ABZR86_RS18595 at 143.576 kb on - strand, within ABZR86_RS18595 at 143.665 kb on + strand, within ABZR86_RS18595 at 143.665 kb on + strand, within ABZR86_RS18595 at 143.665 kb on + strand, within ABZR86_RS18595 at 143.665 kb on + strand, within ABZR86_RS18595 at 143.666 kb on - strand, within ABZR86_RS18595 at 143.711 kb on - strand, within ABZR86_RS18595 at 143.803 kb on + strand, within ABZR86_RS18595 at 143.803 kb on + strand, within ABZR86_RS18595 at 143.804 kb on - strand, within ABZR86_RS18595 at 143.804 kb on - strand, within ABZR86_RS18595 at 143.804 kb on - strand, within ABZR86_RS18595 at 144.015 kb on + strand at 144.015 kb on + strand at 144.017 kb on + strand at 144.018 kb on - strand at 144.111 kb on + strand at 144.111 kb on + strand at 144.118 kb on - strand at 144.126 kb on + strand at 144.126 kb on + strand at 144.127 kb on - strand, within ABZR86_RS18600 at 144.127 kb on - strand, within ABZR86_RS18600 at 144.198 kb on + strand, within ABZR86_RS18600 at 144.198 kb on + strand, within ABZR86_RS18600 at 144.199 kb on - strand, within ABZR86_RS18600 at 144.231 kb on + strand, within ABZR86_RS18600 at 144.231 kb on + strand, within ABZR86_RS18600 at 144.345 kb on + strand, within ABZR86_RS18600 at 144.346 kb on - strand, within ABZR86_RS18600 at 144.346 kb on - strand, within ABZR86_RS18600 at 144.506 kb on + strand, within ABZR86_RS18600 at 144.507 kb on - strand, within ABZR86_RS18600 at 144.517 kb on - strand, within ABZR86_RS18600 at 144.609 kb on + strand, within ABZR86_RS18600 at 144.609 kb on + strand, within ABZR86_RS18600 at 144.609 kb on + strand, within ABZR86_RS18600 at 144.609 kb on + strand, within ABZR86_RS18600 at 144.610 kb on - strand, within ABZR86_RS18600 at 144.749 kb on + strand, within ABZR86_RS18600 at 144.749 kb on + strand, within ABZR86_RS18600 at 144.749 kb on + strand, within ABZR86_RS18600 at 144.750 kb on - strand, within ABZR86_RS18600 at 144.750 kb on - strand, within ABZR86_RS18600 at 144.987 kb on + strand, within ABZR86_RS18600 at 144.987 kb on + strand, within ABZR86_RS18600 at 144.987 kb on + strand, within ABZR86_RS18600 at 144.987 kb on + strand, within ABZR86_RS18600 at 144.988 kb on - strand, within ABZR86_RS18600 at 144.988 kb on - strand, within ABZR86_RS18600 at 144.988 kb on - strand, within ABZR86_RS18600 at 144.988 kb on - strand, within ABZR86_RS18600 at 144.993 kb on + strand, within ABZR86_RS18600 at 144.993 kb on + strand, within ABZR86_RS18600 at 144.993 kb on + strand, within ABZR86_RS18600 at 144.994 kb on - strand, within ABZR86_RS18600 at 144.994 kb on - strand, within ABZR86_RS18600 at 145.052 kb on + strand, within ABZR86_RS18600 at 145.053 kb on - strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.083 kb on + strand, within ABZR86_RS18600 at 145.084 kb on - strand, within ABZR86_RS18600 at 145.084 kb on - strand, within ABZR86_RS18600 at 145.084 kb on - strand, within ABZR86_RS18600 at 145.219 kb on - strand, within ABZR86_RS18600 at 145.219 kb on - strand, within ABZR86_RS18600 at 145.219 kb on - strand, within ABZR86_RS18600 at 145.332 kb on + strand, within ABZR86_RS18600 at 145.332 kb on + strand, within ABZR86_RS18600 at 145.332 kb on + strand, within ABZR86_RS18600 at 145.332 kb on + strand, within ABZR86_RS18600 at 145.333 kb on - strand, within ABZR86_RS18600 at 145.333 kb on - strand, within ABZR86_RS18600 at 145.392 kb on + strand, within ABZR86_RS18600 at 145.392 kb on + strand, within ABZR86_RS18600 at 145.392 kb on + strand, within ABZR86_RS18600 at 145.392 kb on + strand, within ABZR86_RS18600 at 145.393 kb on - strand, within ABZR86_RS18600 at 145.393 kb on - strand, within ABZR86_RS18600 at 145.407 kb on + strand, within ABZR86_RS18600 at 145.407 kb on + strand, within ABZR86_RS18600 at 145.408 kb on - strand, within ABZR86_RS18600 at 145.408 kb on - strand, within ABZR86_RS18600 at 145.408 kb on - strand, within ABZR86_RS18600 at 145.455 kb on + strand, within ABZR86_RS18600 at 145.539 kb on + strand, within ABZR86_RS18600 at 145.540 kb on - strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.563 kb on + strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.564 kb on - strand, within ABZR86_RS18600 at 145.590 kb on + strand, within ABZR86_RS18600 at 145.590 kb on + strand, within ABZR86_RS18600 at 145.710 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.713 kb on + strand, within ABZR86_RS18600 at 145.714 kb on - strand, within ABZR86_RS18600 at 145.714 kb on - strand, within ABZR86_RS18600 at 145.714 kb on - strand, within ABZR86_RS18600 at 145.776 kb on + strand, within ABZR86_RS18600 at 145.776 kb on + strand, within ABZR86_RS18600 at 145.777 kb on - strand, within ABZR86_RS18600 at 145.777 kb on - strand, within ABZR86_RS18600 at 145.777 kb on - strand, within ABZR86_RS18600 at 145.777 kb on - strand, within ABZR86_RS18600 at 145.834 kb on - strand, within ABZR86_RS18600 at 145.834 kb on - strand, within ABZR86_RS18600 at 145.834 kb on - strand, within ABZR86_RS18600 at 146.004 kb on + strand at 146.005 kb on - strand at 146.005 kb on - strand at 146.005 kb on - strand at 146.005 kb on - strand at 146.007 kb on - strand at 146.007 kb on - strand at 146.007 kb on - strand at 146.007 kb on - strand at 146.013 kb on + strand at 146.013 kb on + strand at 146.014 kb on - strand at 146.014 kb on - strand at 146.014 kb on - strand at 146.113 kb on + strand at 146.113 kb on + strand at 146.308 kb on + strand, within ABZR86_RS18605 at 146.496 kb on - strand, within ABZR86_RS18605 at 146.496 kb on - strand, within ABZR86_RS18605 at 146.496 kb on - strand, within ABZR86_RS18605 at 146.642 kb on + strand at 146.642 kb on + strand at 146.642 kb on + strand at 146.643 kb on - strand at 146.643 kb on - strand at 146.643 kb on - strand at 146.643 kb on - strand at 146.643 kb on - strand at 146.649 kb on + strand at 146.650 kb on - strand at 146.650 kb on - strand at 146.650 kb on - strand at 146.688 kb on + strand at 146.688 kb on + strand at 146.688 kb on + strand at 146.688 kb on + strand at 146.689 kb on - strand at 146.689 kb on - strand at 146.737 kb on + strand at 146.737 kb on + strand at 146.737 kb on + strand at 146.737 kb on + strand at 146.738 kb on - strand at 146.976 kb on + strand, within ABZR86_RS18610 at 146.976 kb on + strand, within ABZR86_RS18610 at 146.976 kb on + strand, within ABZR86_RS18610 at 146.976 kb on + strand, within ABZR86_RS18610 at 146.976 kb on + strand, within ABZR86_RS18610 at 146.977 kb on - strand, within ABZR86_RS18610 at 146.977 kb on - strand, within ABZR86_RS18610 at 146.987 kb on - strand, within ABZR86_RS18610
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 142,979 + ABZR86_RS18590 0.74 -1.9 142,992 + ABZR86_RS18590 0.76 +0.4 142,993 - ABZR86_RS18590 0.76 -1.9 143,030 + ABZR86_RS18590 0.82 -2.6 143,308 + ABZR86_RS18595 0.22 -2.1 143,309 - ABZR86_RS18595 0.22 -3.2 143,380 + ABZR86_RS18595 0.31 -4.2 143,380 + ABZR86_RS18595 0.31 -2.7 143,380 + ABZR86_RS18595 0.31 -3.0 143,380 + ABZR86_RS18595 0.31 -3.5 143,380 + ABZR86_RS18595 0.31 -2.3 143,381 - ABZR86_RS18595 0.31 -1.7 143,576 - ABZR86_RS18595 0.56 -3.8 143,665 + ABZR86_RS18595 0.68 +0.6 143,665 + ABZR86_RS18595 0.68 -1.4 143,665 + ABZR86_RS18595 0.68 -1.9 143,665 + ABZR86_RS18595 0.68 -2.0 143,666 - ABZR86_RS18595 0.68 -2.3 143,711 - ABZR86_RS18595 0.74 -4.4 143,803 + ABZR86_RS18595 0.86 -2.0 143,803 + ABZR86_RS18595 0.86 -2.2 143,804 - ABZR86_RS18595 0.86 -2.7 143,804 - ABZR86_RS18595 0.86 -1.8 143,804 - ABZR86_RS18595 0.86 -2.3 144,015 + -2.2 144,015 + -3.5 144,017 + -2.6 144,018 - -3.5 144,111 + -2.6 144,111 + -2.4 144,118 - -2.7 144,126 + -3.7 144,126 + -4.8 144,127 - ABZR86_RS18600 0.10 -3.7 144,127 - ABZR86_RS18600 0.10 -4.1 144,198 + ABZR86_RS18600 0.13 -0.3 144,198 + ABZR86_RS18600 0.13 -4.2 144,199 - ABZR86_RS18600 0.13 -4.0 144,231 + ABZR86_RS18600 0.15 -0.8 144,231 + ABZR86_RS18600 0.15 -4.4 144,345 + ABZR86_RS18600 0.20 -2.6 144,346 - ABZR86_RS18600 0.20 -2.1 144,346 - ABZR86_RS18600 0.20 -5.1 144,506 + ABZR86_RS18600 0.27 -2.1 144,507 - ABZR86_RS18600 0.28 -2.1 144,517 - ABZR86_RS18600 0.28 -3.7 144,609 + ABZR86_RS18600 0.32 -3.4 144,609 + ABZR86_RS18600 0.32 -2.1 144,609 + ABZR86_RS18600 0.32 -1.8 144,609 + ABZR86_RS18600 0.32 -3.1 144,610 - ABZR86_RS18600 0.32 -3.6 144,749 + ABZR86_RS18600 0.39 -3.8 144,749 + ABZR86_RS18600 0.39 -1.7 144,749 + ABZR86_RS18600 0.39 -2.1 144,750 - ABZR86_RS18600 0.39 -5.2 144,750 - ABZR86_RS18600 0.39 -2.0 144,987 + ABZR86_RS18600 0.50 -5.6 144,987 + ABZR86_RS18600 0.50 -4.1 144,987 + ABZR86_RS18600 0.50 -1.9 144,987 + ABZR86_RS18600 0.50 -4.2 144,988 - ABZR86_RS18600 0.50 -4.7 144,988 - ABZR86_RS18600 0.50 -4.1 144,988 - ABZR86_RS18600 0.50 -5.0 144,988 - ABZR86_RS18600 0.50 -4.6 144,993 + ABZR86_RS18600 0.50 -3.0 144,993 + ABZR86_RS18600 0.50 -3.5 144,993 + ABZR86_RS18600 0.50 -3.1 144,994 - ABZR86_RS18600 0.50 -4.0 144,994 - ABZR86_RS18600 0.50 -2.8 145,052 + ABZR86_RS18600 0.53 -2.5 145,053 - ABZR86_RS18600 0.53 -4.5 145,083 + ABZR86_RS18600 0.54 -3.8 145,083 + ABZR86_RS18600 0.54 -2.6 145,083 + ABZR86_RS18600 0.54 -3.9 145,083 + ABZR86_RS18600 0.54 -3.5 145,083 + ABZR86_RS18600 0.54 -2.8 145,083 + ABZR86_RS18600 0.54 -1.4 145,083 + ABZR86_RS18600 0.54 -0.9 145,083 + ABZR86_RS18600 0.54 -3.6 145,083 + ABZR86_RS18600 0.54 -3.6 145,083 + ABZR86_RS18600 0.54 -0.8 145,084 - ABZR86_RS18600 0.54 -2.6 145,084 - ABZR86_RS18600 0.54 -1.1 145,084 - ABZR86_RS18600 0.54 -3.4 145,219 - ABZR86_RS18600 0.60 -4.0 145,219 - ABZR86_RS18600 0.60 -3.8 145,219 - ABZR86_RS18600 0.60 -3.6 145,332 + ABZR86_RS18600 0.66 -4.5 145,332 + ABZR86_RS18600 0.66 -3.4 145,332 + ABZR86_RS18600 0.66 -2.2 145,332 + ABZR86_RS18600 0.66 -3.6 145,333 - ABZR86_RS18600 0.66 -0.6 145,333 - ABZR86_RS18600 0.66 -2.2 145,392 + ABZR86_RS18600 0.68 -2.3 145,392 + ABZR86_RS18600 0.68 -2.5 145,392 + ABZR86_RS18600 0.68 -1.5 145,392 + ABZR86_RS18600 0.68 -3.5 145,393 - ABZR86_RS18600 0.68 -2.6 145,393 - ABZR86_RS18600 0.68 -4.0 145,407 + ABZR86_RS18600 0.69 -3.1 145,407 + ABZR86_RS18600 0.69 -3.8 145,408 - ABZR86_RS18600 0.69 -3.1 145,408 - ABZR86_RS18600 0.69 -2.6 145,408 - ABZR86_RS18600 0.69 -5.0 145,455 + ABZR86_RS18600 0.71 -2.1 145,539 + ABZR86_RS18600 0.75 -4.7 145,540 - ABZR86_RS18600 0.75 -3.5 145,563 + ABZR86_RS18600 0.76 -1.4 145,563 + ABZR86_RS18600 0.76 -2.2 145,563 + ABZR86_RS18600 0.76 -2.7 145,563 + ABZR86_RS18600 0.76 -4.3 145,563 + ABZR86_RS18600 0.76 -2.4 145,563 + ABZR86_RS18600 0.76 -2.6 145,563 + ABZR86_RS18600 0.76 -3.6 145,564 - ABZR86_RS18600 0.76 -3.0 145,564 - ABZR86_RS18600 0.76 -2.9 145,564 - ABZR86_RS18600 0.76 -2.0 145,564 - ABZR86_RS18600 0.76 -2.9 145,564 - ABZR86_RS18600 0.76 -2.8 145,564 - ABZR86_RS18600 0.76 -3.6 145,590 + ABZR86_RS18600 0.77 -2.7 145,590 + ABZR86_RS18600 0.77 -4.2 145,710 + ABZR86_RS18600 0.83 -2.0 145,713 + ABZR86_RS18600 0.83 -2.9 145,713 + ABZR86_RS18600 0.83 -1.3 145,713 + ABZR86_RS18600 0.83 -2.9 145,713 + ABZR86_RS18600 0.83 -3.2 145,713 + ABZR86_RS18600 0.83 -2.8 145,713 + ABZR86_RS18600 0.83 -3.0 145,714 - ABZR86_RS18600 0.83 -3.0 145,714 - ABZR86_RS18600 0.83 -3.6 145,714 - ABZR86_RS18600 0.83 -1.8 145,776 + ABZR86_RS18600 0.86 -2.1 145,776 + ABZR86_RS18600 0.86 -2.9 145,777 - ABZR86_RS18600 0.86 -1.3 145,777 - ABZR86_RS18600 0.86 -3.5 145,777 - ABZR86_RS18600 0.86 -2.5 145,777 - ABZR86_RS18600 0.86 -3.1 145,834 - ABZR86_RS18600 0.89 -3.8 145,834 - ABZR86_RS18600 0.89 -0.2 145,834 - ABZR86_RS18600 0.89 -2.9 146,004 + -2.1 146,005 - -4.0 146,005 - -3.9 146,005 - -3.2 146,005 - -2.9 146,007 - -2.5 146,007 - -2.3 146,007 - -2.9 146,007 - -2.6 146,013 + -3.5 146,013 + -3.2 146,014 - -3.8 146,014 - -4.0 146,014 - -2.3 146,113 + -1.0 146,113 + -2.6 146,308 + ABZR86_RS18605 0.32 +0.8 146,496 - ABZR86_RS18605 0.70 +0.3 146,496 - ABZR86_RS18605 0.70 +0.1 146,496 - ABZR86_RS18605 0.70 -0.3 146,642 + -0.7 146,642 + -0.5 146,642 + -0.0 146,643 - -0.0 146,643 - +0.1 146,643 - +0.4 146,643 - -0.2 146,643 - +0.1 146,649 + -0.3 146,650 - +0.2 146,650 - +0.2 146,650 - +0.1 146,688 + -0.1 146,688 + +0.2 146,688 + +0.4 146,688 + +0.2 146,689 - -0.1 146,689 - +0.1 146,737 + +0.4 146,737 + +0.7 146,737 + +0.3 146,737 + +0.3 146,738 - -0.1 146,976 + ABZR86_RS18610 0.54 -0.0 146,976 + ABZR86_RS18610 0.54 +0.4 146,976 + ABZR86_RS18610 0.54 +0.1 146,976 + ABZR86_RS18610 0.54 +0.7 146,976 + ABZR86_RS18610 0.54 +0.3 146,977 - ABZR86_RS18610 0.54 -0.9 146,977 - ABZR86_RS18610 0.54 -0.2 146,987 - ABZR86_RS18610 0.57 +0.1
Or see this region's nucleotide sequence