Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS06025 and ABZR86_RS06030 are separated by 126 nucleotides ABZR86_RS06030 and ABZR86_RS06035 are separated by 48 nucleotides ABZR86_RS06035 and ABZR86_RS06040 are separated by 408 nucleotides
ABZR86_RS06025: ABZR86_RS06025 - translation initiation factor IF-2, at 1,352,594 to 1,355,401
_RS06025
ABZR86_RS06030: ABZR86_RS06030 - transcription termination factor NusA, at 1,355,528 to 1,357,027
_RS06030
ABZR86_RS06035: ABZR86_RS06035 - ribosome maturation factor RimP, at 1,357,076 to 1,357,588
_RS06035
ABZR86_RS06040: ABZR86_RS06040 - hypothetical protein, at 1,357,997 to 1,358,314
_RS06040
Position (kb)
1355
1356
1357
1358 Strain fitness (log2 ratio)
-2
-1
0
1 at 1355.391 kb on - strand at 1355.431 kb on - strand at 1355.431 kb on - strand at 1355.431 kb on - strand at 1355.686 kb on - strand, within ABZR86_RS06030 at 1357.078 kb on - strand at 1357.078 kb on - strand at 1357.126 kb on - strand at 1357.126 kb on - strand at 1357.604 kb on - strand at 1357.649 kb on - strand at 1357.716 kb on - strand at 1357.716 kb on - strand at 1357.716 kb on - strand at 1357.716 kb on - strand at 1357.880 kb on - strand at 1357.908 kb on + strand at 1357.908 kb on + strand at 1357.909 kb on - strand at 1358.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 1,355,391 - -0.4 1,355,431 - -0.5 1,355,431 - +0.3 1,355,431 - +0.3 1,355,686 - ABZR86_RS06030 0.11 -0.9 1,357,078 - +0.5 1,357,078 - -0.2 1,357,126 - -1.1 1,357,126 - -0.7 1,357,604 - -0.8 1,357,649 - -2.1 1,357,716 - -0.1 1,357,716 - +0.3 1,357,716 - -0.6 1,357,716 - +0.1 1,357,880 - -1.6 1,357,908 + -0.0 1,357,908 + -0.3 1,357,909 - -0.2 1,358,014 + -0.4
Or see this region's nucleotide sequence