Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03798 and CCNA_03799 overlap by 4 nucleotides CCNA_03799 and CCNA_03800 overlap by 88 nucleotides CCNA_03800 and CCNA_03801 are separated by 14 nucleotides
CCNA_03798: CCNA_03798 - tRNA 2-methylthioadenosine synthase-like protein, at 3,961,164 to 3,962,495
_03798
CCNA_03799: CCNA_03799 - short chain dehydrogenase, at 3,962,492 to 3,963,415
_03799
CCNA_03800: CCNA_03800 - diaminopimelate epimerase, at 3,963,328 to 3,964,194
_03800
CCNA_03801: CCNA_03801 - prolyl endopeptidase family, at 3,964,209 to 3,966,470
_03801
Position (kb)
3962
3963
3964 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3962.470 kb on + strand at 3962.596 kb on - strand, within CCNA_03799 at 3962.602 kb on - strand, within CCNA_03799 at 3962.603 kb on - strand, within CCNA_03799 at 3962.660 kb on - strand, within CCNA_03799 at 3962.690 kb on - strand, within CCNA_03799 at 3962.795 kb on - strand, within CCNA_03799 at 3962.808 kb on + strand, within CCNA_03799 at 3962.820 kb on + strand, within CCNA_03799 at 3962.927 kb on - strand, within CCNA_03799 at 3962.976 kb on + strand, within CCNA_03799 at 3962.984 kb on - strand, within CCNA_03799 at 3962.998 kb on - strand, within CCNA_03799 at 3963.040 kb on - strand, within CCNA_03799 at 3963.118 kb on - strand, within CCNA_03799 at 3963.326 kb on - strand at 3963.363 kb on + strand at 3963.386 kb on - strand at 3964.189 kb on + strand at 3964.204 kb on + strand at 3964.207 kb on - strand at 3964.256 kb on - strand at 3964.271 kb on - strand at 3964.281 kb on + strand at 3964.281 kb on + strand at 3964.281 kb on + strand at 3964.289 kb on - strand at 3964.289 kb on - strand at 3964.291 kb on + strand at 3964.321 kb on + strand at 3964.332 kb on + strand at 3964.346 kb on - strand at 3964.371 kb on + strand at 3964.394 kb on - strand at 3964.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 3,962,470 + -1.6 3,962,596 - CCNA_03799 0.11 +0.6 3,962,602 - CCNA_03799 0.12 +1.2 3,962,603 - CCNA_03799 0.12 +1.4 3,962,660 - CCNA_03799 0.18 +0.0 3,962,690 - CCNA_03799 0.21 +1.1 3,962,795 - CCNA_03799 0.33 +1.9 3,962,808 + CCNA_03799 0.34 -1.6 3,962,820 + CCNA_03799 0.35 +0.5 3,962,927 - CCNA_03799 0.47 +0.6 3,962,976 + CCNA_03799 0.52 -0.2 3,962,984 - CCNA_03799 0.53 +1.0 3,962,998 - CCNA_03799 0.55 +3.4 3,963,040 - CCNA_03799 0.59 +1.9 3,963,118 - CCNA_03799 0.68 +1.3 3,963,326 - +3.1 3,963,363 + -1.2 3,963,386 - +2.1 3,964,189 + -1.8 3,964,204 + -1.2 3,964,207 - +0.3 3,964,256 - +0.5 3,964,271 - -0.3 3,964,281 + -2.3 3,964,281 + -2.0 3,964,281 + -2.3 3,964,289 - -1.8 3,964,289 - +0.4 3,964,291 + -1.3 3,964,321 + -1.4 3,964,332 + -0.8 3,964,346 - -1.3 3,964,371 + -0.5 3,964,394 - -1.3 3,964,394 - +0.2
Or see this region's nucleotide sequence