Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2415

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2414 and PfGW456L13_2415 are separated by 53 nucleotidesPfGW456L13_2415 and PfGW456L13_2416 are separated by 154 nucleotidesPfGW456L13_2416 and PfGW456L13_2417 overlap by 4 nucleotides PfGW456L13_2414 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 2,677,875 to 2,679,293 _2414 PfGW456L13_2415 - transcriptional regulator, LuxR family, at 2,679,347 to 2,680,198 _2415 PfGW456L13_2416 - Mobile element protein, at 2,680,353 to 2,681,189 _2416 PfGW456L13_2417 - Mobile element protein, at 2,681,186 to 2,681,491 _2417 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -2 -1 0 1 2at 2678.421 kb on + strand, within PfGW456L13_2414at 2678.619 kb on + strandat 2678.619 kb on + strand, within PfGW456L13_2414at 2678.652 kb on + strand, within PfGW456L13_2414at 2678.653 kb on - strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.721 kb on + strand, within PfGW456L13_2414at 2678.722 kb on - strand, within PfGW456L13_2414at 2678.722 kb on - strand, within PfGW456L13_2414at 2678.722 kb on - strand, within PfGW456L13_2414at 2678.782 kb on - strand, within PfGW456L13_2414at 2678.782 kb on - strand, within PfGW456L13_2414at 2678.874 kb on + strand, within PfGW456L13_2414at 2678.874 kb on + strand, within PfGW456L13_2414at 2678.874 kb on + strand, within PfGW456L13_2414at 2678.875 kb on - strand, within PfGW456L13_2414at 2678.875 kb on - strand, within PfGW456L13_2414at 2678.875 kb on - strand, within PfGW456L13_2414at 2678.875 kb on - strand, within PfGW456L13_2414at 2678.970 kb on + strand, within PfGW456L13_2414at 2678.971 kb on - strand, within PfGW456L13_2414at 2678.971 kb on - strand, within PfGW456L13_2414at 2679.279 kb on + strandat 2679.280 kb on - strandat 2679.367 kb on + strandat 2679.523 kb on + strand, within PfGW456L13_2415at 2679.572 kb on + strand, within PfGW456L13_2415at 2679.611 kb on + strand, within PfGW456L13_2415at 2679.612 kb on - strandat 2679.665 kb on + strand, within PfGW456L13_2415at 2679.665 kb on + strand, within PfGW456L13_2415at 2679.665 kb on + strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.666 kb on - strand, within PfGW456L13_2415at 2679.710 kb on + strand, within PfGW456L13_2415at 2679.711 kb on - strand, within PfGW456L13_2415at 2679.713 kb on + strand, within PfGW456L13_2415at 2679.713 kb on + strand, within PfGW456L13_2415at 2679.714 kb on - strand, within PfGW456L13_2415at 2679.714 kb on - strand, within PfGW456L13_2415at 2679.714 kb on - strand, within PfGW456L13_2415at 2679.722 kb on + strand, within PfGW456L13_2415at 2679.722 kb on + strand, within PfGW456L13_2415at 2679.723 kb on - strand, within PfGW456L13_2415at 2679.723 kb on - strand, within PfGW456L13_2415at 2679.726 kb on - strand, within PfGW456L13_2415at 2679.726 kb on - strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.755 kb on + strand, within PfGW456L13_2415at 2679.756 kb on - strand, within PfGW456L13_2415at 2679.756 kb on - strand, within PfGW456L13_2415at 2679.756 kb on - strand, within PfGW456L13_2415at 2679.756 kb on - strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.758 kb on + strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.759 kb on - strand, within PfGW456L13_2415at 2679.803 kb on + strand, within PfGW456L13_2415at 2679.804 kb on - strand, within PfGW456L13_2415at 2679.804 kb on - strand, within PfGW456L13_2415at 2680.039 kb on + strand, within PfGW456L13_2415at 2680.039 kb on + strand, within PfGW456L13_2415at 2680.039 kb on + strand, within PfGW456L13_2415at 2680.039 kb on + strand, within PfGW456L13_2415at 2680.040 kb on - strand, within PfGW456L13_2415at 2680.040 kb on - strand, within PfGW456L13_2415at 2680.040 kb on - strand, within PfGW456L13_2415at 2680.040 kb on - strand, within PfGW456L13_2415at 2680.040 kb on - strand, within PfGW456L13_2415at 2680.128 kb on - strandat 2680.215 kb on - strandat 2680.228 kb on + strandat 2680.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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2,678,421 + PfGW456L13_2414 0.38 -0.1
2,678,619 + +0.0
2,678,619 + PfGW456L13_2414 0.52 -0.5
2,678,652 + PfGW456L13_2414 0.55 +0.6
2,678,653 - PfGW456L13_2414 0.55 +0.6
2,678,721 + PfGW456L13_2414 0.60 -0.7
2,678,721 + PfGW456L13_2414 0.60 -0.7
2,678,721 + PfGW456L13_2414 0.60 +0.9
2,678,721 + PfGW456L13_2414 0.60 -0.2
2,678,721 + PfGW456L13_2414 0.60 +0.0
2,678,721 + PfGW456L13_2414 0.60 -0.3
2,678,721 + PfGW456L13_2414 0.60 -0.4
2,678,722 - PfGW456L13_2414 0.60 +1.0
2,678,722 - PfGW456L13_2414 0.60 -0.5
2,678,722 - PfGW456L13_2414 0.60 +0.3
2,678,782 - PfGW456L13_2414 0.64 +1.3
2,678,782 - PfGW456L13_2414 0.64 -0.7
2,678,874 + PfGW456L13_2414 0.70 -1.1
2,678,874 + PfGW456L13_2414 0.70 -0.2
2,678,874 + PfGW456L13_2414 0.70 -0.1
2,678,875 - PfGW456L13_2414 0.70 +0.9
2,678,875 - PfGW456L13_2414 0.70 +1.0
2,678,875 - PfGW456L13_2414 0.70 -0.5
2,678,875 - PfGW456L13_2414 0.70 +0.5
2,678,970 + PfGW456L13_2414 0.77 -1.1
2,678,971 - PfGW456L13_2414 0.77 -1.4
2,678,971 - PfGW456L13_2414 0.77 -0.5
2,679,279 + -1.4
2,679,280 - -0.5
2,679,367 + -0.1
2,679,523 + PfGW456L13_2415 0.21 -0.6
2,679,572 + PfGW456L13_2415 0.26 +0.5
2,679,611 + PfGW456L13_2415 0.31 +0.9
2,679,612 - +1.0
2,679,665 + PfGW456L13_2415 0.37 +0.3
2,679,665 + PfGW456L13_2415 0.37 +0.1
2,679,665 + PfGW456L13_2415 0.37 -1.7
2,679,666 - PfGW456L13_2415 0.37 +0.6
2,679,666 - PfGW456L13_2415 0.37 +1.1
2,679,666 - PfGW456L13_2415 0.37 -0.1
2,679,666 - PfGW456L13_2415 0.37 +0.7
2,679,666 - PfGW456L13_2415 0.37 -0.2
2,679,666 - PfGW456L13_2415 0.37 -1.2
2,679,710 + PfGW456L13_2415 0.43 -0.2
2,679,711 - PfGW456L13_2415 0.43 +0.5
2,679,713 + PfGW456L13_2415 0.43 +0.0
2,679,713 + PfGW456L13_2415 0.43 +0.8
2,679,714 - PfGW456L13_2415 0.43 +0.8
2,679,714 - PfGW456L13_2415 0.43 -0.1
2,679,714 - PfGW456L13_2415 0.43 +0.6
2,679,722 + PfGW456L13_2415 0.44 -1.0
2,679,722 + PfGW456L13_2415 0.44 -0.9
2,679,723 - PfGW456L13_2415 0.44 -0.0
2,679,723 - PfGW456L13_2415 0.44 -0.0
2,679,726 - PfGW456L13_2415 0.44 -0.6
2,679,726 - PfGW456L13_2415 0.44 +0.6
2,679,755 + PfGW456L13_2415 0.48 -0.6
2,679,755 + PfGW456L13_2415 0.48 -0.2
2,679,755 + PfGW456L13_2415 0.48 +0.1
2,679,755 + PfGW456L13_2415 0.48 +0.4
2,679,755 + PfGW456L13_2415 0.48 +0.6
2,679,755 + PfGW456L13_2415 0.48 -0.8
2,679,755 + PfGW456L13_2415 0.48 +0.3
2,679,756 - PfGW456L13_2415 0.48 +1.2
2,679,756 - PfGW456L13_2415 0.48 -0.0
2,679,756 - PfGW456L13_2415 0.48 -0.0
2,679,756 - PfGW456L13_2415 0.48 +0.3
2,679,758 + PfGW456L13_2415 0.48 +0.6
2,679,758 + PfGW456L13_2415 0.48 +1.1
2,679,758 + PfGW456L13_2415 0.48 -1.0
2,679,758 + PfGW456L13_2415 0.48 +0.7
2,679,758 + PfGW456L13_2415 0.48 +1.1
2,679,758 + PfGW456L13_2415 0.48 +0.3
2,679,758 + PfGW456L13_2415 0.48 -0.8
2,679,758 + PfGW456L13_2415 0.48 +0.4
2,679,758 + PfGW456L13_2415 0.48 -0.8
2,679,758 + PfGW456L13_2415 0.48 +0.5
2,679,758 + PfGW456L13_2415 0.48 +0.4
2,679,758 + PfGW456L13_2415 0.48 +0.3
2,679,758 + PfGW456L13_2415 0.48 +1.9
2,679,758 + PfGW456L13_2415 0.48 +0.1
2,679,758 + PfGW456L13_2415 0.48 +0.4
2,679,759 - PfGW456L13_2415 0.48 -0.3
2,679,759 - PfGW456L13_2415 0.48 +0.9
2,679,759 - PfGW456L13_2415 0.48 -0.2
2,679,759 - PfGW456L13_2415 0.48 -0.7
2,679,759 - PfGW456L13_2415 0.48 -2.0
2,679,759 - PfGW456L13_2415 0.48 -2.7
2,679,759 - PfGW456L13_2415 0.48 -0.7
2,679,759 - PfGW456L13_2415 0.48 -0.2
2,679,759 - PfGW456L13_2415 0.48 -0.5
2,679,759 - PfGW456L13_2415 0.48 -0.3
2,679,759 - PfGW456L13_2415 0.48 +1.4
2,679,759 - PfGW456L13_2415 0.48 +1.2
2,679,759 - PfGW456L13_2415 0.48 +0.6
2,679,759 - PfGW456L13_2415 0.48 -1.2
2,679,759 - PfGW456L13_2415 0.48 +0.0
2,679,759 - PfGW456L13_2415 0.48 +0.2
2,679,759 - PfGW456L13_2415 0.48 -0.0
2,679,759 - PfGW456L13_2415 0.48 +0.3
2,679,759 - PfGW456L13_2415 0.48 +0.2
2,679,803 + PfGW456L13_2415 0.54 +0.5
2,679,804 - PfGW456L13_2415 0.54 -0.2
2,679,804 - PfGW456L13_2415 0.54 +1.3
2,680,039 + PfGW456L13_2415 0.81 +0.4
2,680,039 + PfGW456L13_2415 0.81 +0.3
2,680,039 + PfGW456L13_2415 0.81 +0.7
2,680,039 + PfGW456L13_2415 0.81 +0.2
2,680,040 - PfGW456L13_2415 0.81 -0.3
2,680,040 - PfGW456L13_2415 0.81 -1.0
2,680,040 - PfGW456L13_2415 0.81 +0.9
2,680,040 - PfGW456L13_2415 0.81 -0.1
2,680,040 - PfGW456L13_2415 0.81 -0.1
2,680,128 - +0.1
2,680,215 - +0.3
2,680,228 + +1.1
2,680,329 - +0.3

Or see this region's nucleotide sequence