Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02759 and SMc02758 are separated by 1 nucleotides SMc02758 and SMc02757 are separated by 6 nucleotides SMc02757 and SMc02756 are separated by 9 nucleotides
SMc02759: SMc02759 - hypothetical protein, at 38,055 to 41,234
SMc02759
SMc02758: SMc02758 - nucleotidyl transferase, at 41,236 to 41,967
SMc02758
SMc02757: SMc02757 - hypothetical protein, at 41,974 to 43,488
SMc02757
SMc02756: SMc02756 - sensor histidine kinase, at 43,498 to 45,978
SMc02756
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.282 kb on - strand at 41.367 kb on - strand, within SMc02758 at 41.852 kb on + strand, within SMc02758 at 41.853 kb on - strand, within SMc02758 at 41.853 kb on - strand, within SMc02758 at 41.876 kb on - strand, within SMc02758 at 42.012 kb on + strand at 42.236 kb on + strand, within SMc02757 at 42.237 kb on - strand, within SMc02757 at 42.311 kb on + strand, within SMc02757 at 42.312 kb on - strand, within SMc02757 at 42.477 kb on - strand, within SMc02757 at 42.527 kb on + strand, within SMc02757 at 42.671 kb on + strand, within SMc02757 at 42.860 kb on + strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.879 kb on + strand, within SMc02757 at 42.879 kb on + strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.999 kb on - strand, within SMc02757 at 43.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 41,282 - -1.4 41,367 - SMc02758 0.18 -1.3 41,852 + SMc02758 0.84 -0.9 41,853 - SMc02758 0.84 -1.0 41,853 - SMc02758 0.84 +0.4 41,876 - SMc02758 0.87 +0.1 42,012 + -0.9 42,236 + SMc02757 0.17 +3.4 42,237 - SMc02757 0.17 +3.7 42,311 + SMc02757 0.22 +3.2 42,312 - SMc02757 0.22 +2.7 42,477 - SMc02757 0.33 -0.1 42,527 + SMc02757 0.37 +0.8 42,671 + SMc02757 0.46 -3.0 42,860 + SMc02757 0.58 +0.3 42,861 - SMc02757 0.59 +1.1 42,861 - SMc02757 0.59 +1.4 42,861 - SMc02757 0.59 -2.5 42,879 + SMc02757 0.60 +0.3 42,879 + SMc02757 0.60 +1.0 42,880 - SMc02757 0.60 -3.1 42,880 - SMc02757 0.60 +1.7 42,880 - SMc02757 0.60 +0.5 42,999 - SMc02757 0.68 -0.9 43,491 - +1.1
Or see this region's nucleotide sequence