Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00182

Experiment: PYE with perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00180 and CCNA_00181 overlap by 4 nucleotidesCCNA_00181 and CCNA_00182 overlap by 4 nucleotidesCCNA_00182 and CCNA_00183 are separated by 109 nucleotidesCCNA_00183 and CCNA_00184 are separated by 58 nucleotides CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954 _00180 CCNA_00181: CCNA_00181 - type II secretion pathway protein M, at 194,951 to 195,427 _00181 CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140 _00182 CCNA_00183: CCNA_00183 - type II secretory pathway, prepilin signal peptidase, at 196,250 to 197,011 _00183 CCNA_00184: CCNA_00184 - hypothetical protein, at 197,070 to 197,267 _00184 Position (kb) 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 194.456 kb on - strand, within CCNA_00180at 194.510 kb on - strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.546 kb on - strand, within CCNA_00180at 194.548 kb on - strand, within CCNA_00180at 194.638 kb on - strand, within CCNA_00180at 194.640 kb on - strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.677 kb on - strand, within CCNA_00180at 194.679 kb on - strand, within CCNA_00180at 194.719 kb on - strand, within CCNA_00180at 194.752 kb on + strand, within CCNA_00180at 194.758 kb on + strand, within CCNA_00180at 194.777 kb on - strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.847 kb on + strandat 194.869 kb on + strandat 194.875 kb on + strandat 194.883 kb on - strandat 194.907 kb on - strandat 194.918 kb on + strandat 194.948 kb on + strandat 194.949 kb on - strandat 194.956 kb on - strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 195.048 kb on - strand, within CCNA_00181at 195.057 kb on + strand, within CCNA_00181at 195.088 kb on + strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.130 kb on + strand, within CCNA_00181at 195.138 kb on - strand, within CCNA_00181at 195.210 kb on - strand, within CCNA_00181at 195.273 kb on - strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.313 kb on - strand, within CCNA_00181at 195.318 kb on - strand, within CCNA_00181at 195.331 kb on - strand, within CCNA_00181at 195.358 kb on - strand, within CCNA_00181at 195.388 kb on + strandat 195.396 kb on - strandat 195.396 kb on - strandat 195.408 kb on - strandat 195.442 kb on - strandat 195.464 kb on + strandat 195.468 kb on + strandat 195.475 kb on + strandat 195.524 kb on + strand, within CCNA_00182at 195.524 kb on + strand, within CCNA_00182at 195.529 kb on - strand, within CCNA_00182at 195.530 kb on - strand, within CCNA_00182at 195.547 kb on - strand, within CCNA_00182at 195.549 kb on - strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.581 kb on - strand, within CCNA_00182at 195.631 kb on - strand, within CCNA_00182at 195.636 kb on + strand, within CCNA_00182at 195.640 kb on - strand, within CCNA_00182at 195.654 kb on + strand, within CCNA_00182at 195.672 kb on - strand, within CCNA_00182at 195.683 kb on - strand, within CCNA_00182at 195.696 kb on + strand, within CCNA_00182at 195.711 kb on - strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.882 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.914 kb on - strand, within CCNA_00182at 195.916 kb on + strand, within CCNA_00182at 195.937 kb on - strand, within CCNA_00182at 195.985 kb on - strand, within CCNA_00182at 195.985 kb on - strand, within CCNA_00182at 195.995 kb on - strand, within CCNA_00182at 195.996 kb on + strand, within CCNA_00182at 196.004 kb on - strand, within CCNA_00182at 196.028 kb on - strand, within CCNA_00182at 196.046 kb on + strand, within CCNA_00182at 196.051 kb on + strand, within CCNA_00182at 196.059 kb on - strand, within CCNA_00182at 196.114 kb on + strandat 196.246 kb on + strandat 196.259 kb on - strandat 196.261 kb on - strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.278 kb on - strandat 196.283 kb on - strandat 196.361 kb on + strand, within CCNA_00183at 196.361 kb on + strand, within CCNA_00183at 196.362 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.403 kb on + strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.408 kb on + strand, within CCNA_00183at 196.462 kb on - strand, within CCNA_00183at 196.478 kb on - strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.511 kb on - strand, within CCNA_00183at 196.530 kb on - strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.576 kb on - strand, within CCNA_00183at 196.619 kb on + strand, within CCNA_00183at 196.619 kb on + strand, within CCNA_00183at 196.632 kb on - strand, within CCNA_00183at 196.656 kb on + strand, within CCNA_00183at 196.699 kb on - strand, within CCNA_00183at 196.772 kb on - strand, within CCNA_00183at 196.776 kb on + strand, within CCNA_00183at 196.779 kb on - strand, within CCNA_00183at 196.784 kb on - strand, within CCNA_00183at 196.814 kb on - strand, within CCNA_00183at 196.814 kb on - strand, within CCNA_00183at 196.833 kb on - strand, within CCNA_00183at 196.851 kb on + strand, within CCNA_00183at 196.868 kb on - strand, within CCNA_00183at 196.901 kb on - strand, within CCNA_00183at 196.913 kb on - strand, within CCNA_00183at 196.989 kb on + strandat 196.989 kb on + strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 197.014 kb on - strandat 197.015 kb on - strandat 197.017 kb on + strandat 197.027 kb on + strandat 197.027 kb on + strandat 197.035 kb on - strandat 197.043 kb on + strandat 197.043 kb on + strandat 197.051 kb on - strandat 197.051 kb on - strandat 197.099 kb on + strand, within CCNA_00184at 197.119 kb on - strand, within CCNA_00184at 197.121 kb on + strand, within CCNA_00184at 197.129 kb on - strand, within CCNA_00184

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with perchlorate 25 mM
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194,456 - CCNA_00180 0.55 -1.0
194,510 - CCNA_00180 0.60 +1.0
194,540 + CCNA_00180 0.63 -0.7
194,546 - CCNA_00180 0.63 +0.5
194,548 - CCNA_00180 0.63 +0.4
194,638 - CCNA_00180 0.71 +0.8
194,640 - CCNA_00180 0.72 +0.3
194,671 + CCNA_00180 0.74 -2.0
194,671 + CCNA_00180 0.74 -0.2
194,677 - CCNA_00180 0.75 -0.4
194,679 - CCNA_00180 0.75 +1.0
194,719 - CCNA_00180 0.79 -0.8
194,752 + CCNA_00180 0.82 -0.9
194,758 + CCNA_00180 0.82 -0.5
194,777 - CCNA_00180 0.84 -1.5
194,779 + CCNA_00180 0.84 +0.1
194,779 + CCNA_00180 0.84 +0.2
194,779 + CCNA_00180 0.84 -0.4
194,787 - CCNA_00180 0.85 +0.3
194,787 - CCNA_00180 0.85 -0.7
194,787 - CCNA_00180 0.85 -0.4
194,847 + +0.5
194,869 + -1.9
194,875 + +1.3
194,883 - -1.1
194,907 - -1.3
194,918 + -1.0
194,948 + -1.0
194,949 - -1.1
194,956 - -1.1
194,962 + -0.0
194,962 + -0.0
194,962 + +0.2
194,962 + -1.0
195,048 - CCNA_00181 0.20 -0.0
195,057 + CCNA_00181 0.22 +0.8
195,088 + CCNA_00181 0.29 +0.1
195,111 - CCNA_00181 0.34 -0.8
195,111 - CCNA_00181 0.34 +0.6
195,111 - CCNA_00181 0.34 -1.0
195,130 + CCNA_00181 0.38 -0.5
195,138 - CCNA_00181 0.39 -0.5
195,210 - CCNA_00181 0.54 -1.0
195,273 - CCNA_00181 0.68 -0.5
195,310 + CCNA_00181 0.75 -2.0
195,310 + CCNA_00181 0.75 -0.9
195,310 + CCNA_00181 0.75 -1.1
195,310 + CCNA_00181 0.75 +1.8
195,313 - CCNA_00181 0.76 -1.2
195,318 - CCNA_00181 0.77 +0.6
195,331 - CCNA_00181 0.80 +0.0
195,358 - CCNA_00181 0.85 -0.9
195,388 + +1.0
195,396 - +0.5
195,396 - -0.7
195,408 - +1.5
195,442 - +0.4
195,464 + +1.4
195,468 + +1.0
195,475 + -0.6
195,524 + CCNA_00182 0.14 -0.7
195,524 + CCNA_00182 0.14 -0.5
195,529 - CCNA_00182 0.15 -0.2
195,530 - CCNA_00182 0.15 -0.4
195,547 - CCNA_00182 0.17 -0.2
195,549 - CCNA_00182 0.17 -1.2
195,558 + CCNA_00182 0.19 -0.2
195,558 + CCNA_00182 0.19 -0.2
195,558 + CCNA_00182 0.19 -0.2
195,558 + CCNA_00182 0.19 -0.3
195,558 + CCNA_00182 0.19 +0.8
195,558 + CCNA_00182 0.19 +0.8
195,558 + CCNA_00182 0.19 -0.0
195,558 + CCNA_00182 0.19 +0.6
195,566 - CCNA_00182 0.20 -3.2
195,566 - CCNA_00182 0.20 -1.2
195,566 - CCNA_00182 0.20 -1.3
195,566 - CCNA_00182 0.20 -0.1
195,573 + CCNA_00182 0.21 -1.1
195,573 + CCNA_00182 0.21 -0.5
195,573 + CCNA_00182 0.21 -0.4
195,581 - CCNA_00182 0.22 -1.0
195,631 - CCNA_00182 0.29 -0.6
195,636 + CCNA_00182 0.30 +1.5
195,640 - CCNA_00182 0.30 -0.3
195,654 + CCNA_00182 0.32 -0.2
195,672 - CCNA_00182 0.35 +0.6
195,683 - CCNA_00182 0.36 -0.4
195,696 + CCNA_00182 0.38 -0.0
195,711 - CCNA_00182 0.40 -0.2
195,757 + CCNA_00182 0.46 +0.4
195,757 + CCNA_00182 0.46 -1.3
195,757 + CCNA_00182 0.46 -1.1
195,758 + CCNA_00182 0.47 -1.1
195,758 + CCNA_00182 0.47 +1.2
195,758 + CCNA_00182 0.47 -0.1
195,758 + CCNA_00182 0.47 +0.4
195,765 - CCNA_00182 0.48 -2.4
195,765 - CCNA_00182 0.48 +0.1
195,765 - CCNA_00182 0.48 -1.6
195,765 - CCNA_00182 0.48 -3.4
195,765 - CCNA_00182 0.48 -2.7
195,765 - CCNA_00182 0.48 -1.8
195,765 - CCNA_00182 0.48 -0.5
195,825 + CCNA_00182 0.56 -0.9
195,825 + CCNA_00182 0.56 +0.6
195,882 + CCNA_00182 0.64 -0.4
195,892 + CCNA_00182 0.65 -0.3
195,892 + CCNA_00182 0.65 +0.6
195,914 - CCNA_00182 0.68 -1.0
195,916 + CCNA_00182 0.69 -1.2
195,937 - CCNA_00182 0.72 -1.6
195,985 - CCNA_00182 0.78 -2.3
195,985 - CCNA_00182 0.78 +1.0
195,995 - CCNA_00182 0.80 -0.0
195,996 + CCNA_00182 0.80 +0.2
196,004 - CCNA_00182 0.81 -1.1
196,028 - CCNA_00182 0.84 -0.7
196,046 + CCNA_00182 0.87 -0.4
196,051 + CCNA_00182 0.87 +2.0
196,059 - CCNA_00182 0.89 +2.8
196,114 + -0.9
196,246 + -2.0
196,259 - -3.1
196,261 - -1.4
196,275 + -0.6
196,275 + -2.3
196,275 + -1.1
196,278 - +1.2
196,283 - -1.9
196,361 + CCNA_00183 0.15 -1.7
196,361 + CCNA_00183 0.15 -1.0
196,362 - CCNA_00183 0.15 +0.2
196,369 - CCNA_00183 0.16 -2.1
196,369 - CCNA_00183 0.16 +0.3
196,403 + CCNA_00183 0.20 +0.2
196,406 - CCNA_00183 0.20 +1.8
196,406 - CCNA_00183 0.20 +0.1
196,408 + CCNA_00183 0.21 +2.3
196,462 - CCNA_00183 0.28 -0.9
196,478 - CCNA_00183 0.30 -0.1
196,500 + CCNA_00183 0.33 -1.7
196,500 + CCNA_00183 0.33 -0.7
196,500 + CCNA_00183 0.33 -1.6
196,511 - CCNA_00183 0.34 -0.5
196,530 - CCNA_00183 0.37 -0.2
196,553 + CCNA_00183 0.40 -0.7
196,553 + CCNA_00183 0.40 -1.5
196,553 + CCNA_00183 0.40 -1.8
196,576 - CCNA_00183 0.43 -0.4
196,619 + CCNA_00183 0.48 -3.4
196,619 + CCNA_00183 0.48 -0.8
196,632 - CCNA_00183 0.50 +1.2
196,656 + CCNA_00183 0.53 -1.9
196,699 - CCNA_00183 0.59 +0.3
196,772 - CCNA_00183 0.69 -0.5
196,776 + CCNA_00183 0.69 -0.9
196,779 - CCNA_00183 0.69 +0.2
196,784 - CCNA_00183 0.70 +1.2
196,814 - CCNA_00183 0.74 -0.5
196,814 - CCNA_00183 0.74 -0.8
196,833 - CCNA_00183 0.77 -1.4
196,851 + CCNA_00183 0.79 -0.5
196,868 - CCNA_00183 0.81 -1.0
196,901 - CCNA_00183 0.85 +0.5
196,913 - CCNA_00183 0.87 -0.8
196,989 + -0.9
196,989 + +0.8
196,997 - -0.2
196,997 - +0.7
196,997 - -0.2
196,997 - -0.3
196,997 - -0.3
197,014 - +0.5
197,015 - +1.2
197,017 + +0.0
197,027 + +0.4
197,027 + -0.7
197,035 - -1.1
197,043 + -0.0
197,043 + -0.9
197,051 - -0.5
197,051 - -1.4
197,099 + CCNA_00184 0.15 +0.2
197,119 - CCNA_00184 0.25 -2.2
197,121 + CCNA_00184 0.26 -0.8
197,129 - CCNA_00184 0.30 -1.9

Or see this region's nucleotide sequence