Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_262 and Pf1N1B4_263 are separated by 201 nucleotides Pf1N1B4_263 and Pf1N1B4_264 are separated by 103 nucleotides
Pf1N1B4_262 - Probable protease htpX homolog (EC 3.4.24.-), at 322,107 to 322,994
_262
Pf1N1B4_263 - Thiopurine S-methyltransferase (EC 2.1.1.67), at 323,196 to 323,852
_263
Pf1N1B4_264 - FIG074102: hypothetical protein, at 323,956 to 324,723
_264
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.434 kb on + strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.435 kb on - strand, within Pf1N1B4_262 at 322.644 kb on - strand, within Pf1N1B4_262 at 322.688 kb on + strand, within Pf1N1B4_262 at 322.688 kb on + strand, within Pf1N1B4_262 at 322.689 kb on - strand, within Pf1N1B4_262 at 322.695 kb on + strand, within Pf1N1B4_262 at 322.695 kb on + strand, within Pf1N1B4_262 at 322.695 kb on + strand, within Pf1N1B4_262 at 322.695 kb on + strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.696 kb on - strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.698 kb on + strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.699 kb on - strand, within Pf1N1B4_262 at 322.702 kb on + strand, within Pf1N1B4_262 at 322.702 kb on + strand, within Pf1N1B4_262 at 322.703 kb on - strand, within Pf1N1B4_262 at 322.703 kb on - strand, within Pf1N1B4_262 at 322.703 kb on - strand, within Pf1N1B4_262 at 322.703 kb on - strand, within Pf1N1B4_262 at 322.934 kb on + strand at 322.934 kb on + strand at 322.934 kb on + strand at 322.934 kb on + strand at 322.934 kb on + strand at 322.934 kb on + strand at 322.934 kb on + strand at 322.935 kb on - strand at 322.935 kb on - strand at 322.935 kb on - strand at 323.057 kb on + strand at 323.103 kb on - strand at 323.127 kb on + strand at 323.150 kb on - strand at 323.181 kb on - strand at 323.193 kb on + strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.198 kb on - strand at 323.380 kb on + strand, within Pf1N1B4_263 at 323.390 kb on + strand, within Pf1N1B4_263 at 323.444 kb on - strand, within Pf1N1B4_263 at 323.492 kb on - strand, within Pf1N1B4_263 at 323.492 kb on - strand, within Pf1N1B4_263 at 323.852 kb on + strand at 323.852 kb on + strand at 323.898 kb on - strand at 323.937 kb on + strand at 323.937 kb on + strand at 323.937 kb on + strand at 323.937 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.971 kb on + strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.972 kb on - strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.973 kb on + strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.974 kb on - strand at 323.997 kb on - strand at 323.997 kb on - strand at 324.074 kb on + strand, within Pf1N1B4_264 at 324.074 kb on + strand, within Pf1N1B4_264 at 324.181 kb on + strand, within Pf1N1B4_264 at 324.310 kb on + strand, within Pf1N1B4_264 at 324.311 kb on - strand, within Pf1N1B4_264 at 324.585 kb on + strand, within Pf1N1B4_264 at 324.585 kb on + strand, within Pf1N1B4_264 at 324.585 kb on + strand, within Pf1N1B4_264 at 324.585 kb on + strand, within Pf1N1B4_264 at 324.586 kb on - strand, within Pf1N1B4_264 at 324.586 kb on - strand, within Pf1N1B4_264 at 324.586 kb on - strand, within Pf1N1B4_264 at 324.586 kb on - strand at 324.631 kb on + strand, within Pf1N1B4_264 at 324.632 kb on - strand, within Pf1N1B4_264 at 324.632 kb on - strand, within Pf1N1B4_264 at 324.632 kb on - strand, within Pf1N1B4_264 at 324.705 kb on + strand at 324.705 kb on + strand at 324.705 kb on + strand at 324.705 kb on + strand at 324.705 kb on + strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.706 kb on - strand at 324.709 kb on + strand at 324.709 kb on + strand at 324.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 322,434 + Pf1N1B4_262 0.37 +0.1 322,434 + Pf1N1B4_262 0.37 -0.6 322,434 + Pf1N1B4_262 0.37 +0.1 322,434 + Pf1N1B4_262 0.37 -0.2 322,434 + Pf1N1B4_262 0.37 +0.2 322,434 + Pf1N1B4_262 0.37 -0.2 322,435 - Pf1N1B4_262 0.37 +1.1 322,435 - Pf1N1B4_262 0.37 -0.0 322,435 - Pf1N1B4_262 0.37 +1.0 322,435 - Pf1N1B4_262 0.37 +0.8 322,435 - Pf1N1B4_262 0.37 -0.2 322,435 - Pf1N1B4_262 0.37 +0.8 322,435 - Pf1N1B4_262 0.37 +0.3 322,435 - Pf1N1B4_262 0.37 -0.1 322,435 - Pf1N1B4_262 0.37 -1.9 322,644 - Pf1N1B4_262 0.60 -0.3 322,688 + Pf1N1B4_262 0.65 +0.5 322,688 + Pf1N1B4_262 0.65 +0.7 322,689 - Pf1N1B4_262 0.66 -0.5 322,695 + Pf1N1B4_262 0.66 -0.3 322,695 + Pf1N1B4_262 0.66 -1.2 322,695 + Pf1N1B4_262 0.66 +0.9 322,695 + Pf1N1B4_262 0.66 +0.3 322,696 - Pf1N1B4_262 0.66 -0.1 322,696 - Pf1N1B4_262 0.66 -0.5 322,696 - Pf1N1B4_262 0.66 +0.6 322,696 - Pf1N1B4_262 0.66 -0.3 322,696 - Pf1N1B4_262 0.66 +1.1 322,696 - Pf1N1B4_262 0.66 +0.1 322,696 - Pf1N1B4_262 0.66 +0.6 322,696 - Pf1N1B4_262 0.66 +1.1 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 +0.5 322,698 + Pf1N1B4_262 0.67 +0.2 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 +0.8 322,698 + Pf1N1B4_262 0.67 -0.4 322,698 + Pf1N1B4_262 0.67 -0.2 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 +0.6 322,698 + Pf1N1B4_262 0.67 +0.2 322,698 + Pf1N1B4_262 0.67 +0.1 322,698 + Pf1N1B4_262 0.67 +0.3 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 -0.2 322,698 + Pf1N1B4_262 0.67 +0.2 322,698 + Pf1N1B4_262 0.67 -1.0 322,698 + Pf1N1B4_262 0.67 +0.5 322,698 + Pf1N1B4_262 0.67 +0.8 322,698 + Pf1N1B4_262 0.67 -0.3 322,698 + Pf1N1B4_262 0.67 -0.6 322,698 + Pf1N1B4_262 0.67 -0.3 322,698 + Pf1N1B4_262 0.67 +0.5 322,698 + Pf1N1B4_262 0.67 -1.2 322,698 + Pf1N1B4_262 0.67 +0.0 322,698 + Pf1N1B4_262 0.67 -0.3 322,698 + Pf1N1B4_262 0.67 +1.8 322,698 + Pf1N1B4_262 0.67 +0.4 322,698 + Pf1N1B4_262 0.67 -0.0 322,698 + Pf1N1B4_262 0.67 +0.6 322,698 + Pf1N1B4_262 0.67 +0.1 322,698 + Pf1N1B4_262 0.67 -0.1 322,698 + Pf1N1B4_262 0.67 +0.4 322,698 + Pf1N1B4_262 0.67 -0.6 322,698 + Pf1N1B4_262 0.67 +0.3 322,698 + Pf1N1B4_262 0.67 +0.5 322,698 + Pf1N1B4_262 0.67 -0.1 322,699 - Pf1N1B4_262 0.67 -0.3 322,699 - Pf1N1B4_262 0.67 -1.0 322,699 - Pf1N1B4_262 0.67 +0.0 322,699 - Pf1N1B4_262 0.67 +0.8 322,699 - Pf1N1B4_262 0.67 -0.4 322,699 - Pf1N1B4_262 0.67 +0.7 322,699 - Pf1N1B4_262 0.67 +0.3 322,699 - Pf1N1B4_262 0.67 -0.1 322,699 - Pf1N1B4_262 0.67 +0.5 322,699 - Pf1N1B4_262 0.67 -1.4 322,699 - Pf1N1B4_262 0.67 +0.2 322,699 - Pf1N1B4_262 0.67 +0.2 322,699 - Pf1N1B4_262 0.67 +1.1 322,699 - Pf1N1B4_262 0.67 +0.9 322,699 - Pf1N1B4_262 0.67 +0.2 322,699 - Pf1N1B4_262 0.67 -0.1 322,699 - Pf1N1B4_262 0.67 -0.5 322,699 - Pf1N1B4_262 0.67 -0.4 322,699 - Pf1N1B4_262 0.67 +0.3 322,699 - Pf1N1B4_262 0.67 -0.5 322,699 - Pf1N1B4_262 0.67 +0.4 322,699 - Pf1N1B4_262 0.67 +1.0 322,699 - Pf1N1B4_262 0.67 -2.4 322,699 - Pf1N1B4_262 0.67 +1.1 322,699 - Pf1N1B4_262 0.67 +0.1 322,702 + Pf1N1B4_262 0.67 -0.4 322,702 + Pf1N1B4_262 0.67 -0.9 322,703 - Pf1N1B4_262 0.67 +1.0 322,703 - Pf1N1B4_262 0.67 -0.3 322,703 - Pf1N1B4_262 0.67 +0.5 322,703 - Pf1N1B4_262 0.67 +0.3 322,934 + -1.8 322,934 + +0.5 322,934 + -0.2 322,934 + +0.2 322,934 + +0.3 322,934 + -0.0 322,934 + -0.3 322,935 - -0.0 322,935 - -0.4 322,935 - -0.8 323,057 + +0.3 323,103 - -1.7 323,127 + +0.4 323,150 - -1.3 323,181 - -1.4 323,193 + -0.5 323,194 - +0.5 323,194 - +0.3 323,194 - +0.9 323,194 - -0.0 323,194 - +1.7 323,194 - +0.8 323,194 - +0.3 323,194 - +1.4 323,194 - +0.1 323,194 - +0.9 323,194 - -1.2 323,194 - -0.2 323,198 - -0.5 323,380 + Pf1N1B4_263 0.28 -1.1 323,390 + Pf1N1B4_263 0.30 -1.0 323,444 - Pf1N1B4_263 0.38 -1.6 323,492 - Pf1N1B4_263 0.45 -1.2 323,492 - Pf1N1B4_263 0.45 +1.5 323,852 + -0.5 323,852 + -0.8 323,898 - +1.2 323,937 + +2.8 323,937 + -1.2 323,937 + +0.1 323,937 + +0.8 323,971 + +0.0 323,971 + +0.5 323,971 + -1.8 323,971 + +2.4 323,971 + -0.2 323,971 + +1.8 323,971 + -0.5 323,971 + -0.8 323,971 + -1.8 323,972 - +0.1 323,972 - -0.2 323,972 - -1.8 323,972 - +0.7 323,972 - +0.8 323,972 - +1.2 323,972 - +0.6 323,972 - -1.1 323,973 + -2.0 323,973 + -0.8 323,973 + +0.8 323,973 + +0.2 323,973 + +0.8 323,973 + +0.8 323,973 + +0.5 323,973 + +0.8 323,973 + +1.8 323,973 + -0.5 323,974 - +0.2 323,974 - +0.3 323,974 - -0.8 323,974 - +0.5 323,974 - -2.0 323,974 - +1.2 323,974 - -0.2 323,974 - -0.5 323,974 - +0.2 323,974 - -0.5 323,974 - -1.2 323,974 - -0.9 323,997 - +1.8 323,997 - +0.4 324,074 + Pf1N1B4_264 0.15 +1.1 324,074 + Pf1N1B4_264 0.15 -2.6 324,181 + Pf1N1B4_264 0.29 -0.4 324,310 + Pf1N1B4_264 0.46 -2.8 324,311 - Pf1N1B4_264 0.46 -0.9 324,585 + Pf1N1B4_264 0.82 -0.8 324,585 + Pf1N1B4_264 0.82 -0.1 324,585 + Pf1N1B4_264 0.82 -0.2 324,585 + Pf1N1B4_264 0.82 -1.0 324,586 - Pf1N1B4_264 0.82 +1.0 324,586 - Pf1N1B4_264 0.82 -0.8 324,586 - Pf1N1B4_264 0.82 +0.6 324,586 - -0.2 324,631 + Pf1N1B4_264 0.88 -1.5 324,632 - Pf1N1B4_264 0.88 +0.2 324,632 - Pf1N1B4_264 0.88 +0.2 324,632 - Pf1N1B4_264 0.88 +1.8 324,705 + -2.5 324,705 + +1.9 324,705 + +1.4 324,705 + -1.0 324,705 + -0.2 324,706 - +0.8 324,706 - -0.1 324,706 - +2.1 324,706 - -1.4 324,706 - +0.8 324,706 - +1.4 324,706 - +0.8 324,709 + -0.2 324,709 + +0.8 324,709 + -1.5
Or see this region's nucleotide sequence