Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0275 and Psyr_0276 are separated by 67 nucleotides Psyr_0276 and Psyr_0277 overlap by 1 nucleotides Psyr_0277 and Psyr_0278 overlap by 8 nucleotides Psyr_0278 and Psyr_0279 are separated by 38 nucleotides
Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450
_0275
Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000
_0276
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.238 kb on + strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.248 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.312 kb on + strand, within Psyr_0275 at 294.328 kb on + strand, within Psyr_0275 at 294.329 kb on - strand, within Psyr_0275 at 294.436 kb on + strand at 294.437 kb on - strand at 294.463 kb on + strand at 294.464 kb on - strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.504 kb on + strand at 294.526 kb on + strand at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.976 kb on - strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.214 kb on - strand, within Psyr_0277 at 295.460 kb on + strand, within Psyr_0277 at 295.461 kb on - strand, within Psyr_0277 at 295.480 kb on + strand, within Psyr_0277 at 295.481 kb on - strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.776 kb on + strand at 295.776 kb on + strand at 295.776 kb on + strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.794 kb on + strand at 295.795 kb on - strand at 295.795 kb on - strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.877 kb on + strand, within Psyr_0278 at 295.877 kb on + strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.466 kb on + strand, within Psyr_0278 at 296.467 kb on - strand, within Psyr_0278 at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.568 kb on - strand at 296.593 kb on + strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 294,238 + Psyr_0275 0.77 +0.8 294,239 - Psyr_0275 0.77 +0.3 294,239 - Psyr_0275 0.77 +0.6 294,248 - Psyr_0275 0.78 -1.2 294,270 - Psyr_0275 0.81 -0.6 294,270 - Psyr_0275 0.81 +0.7 294,270 - Psyr_0275 0.81 -0.4 294,273 + Psyr_0275 0.81 +1.0 294,312 + Psyr_0275 0.85 -0.1 294,328 + Psyr_0275 0.87 +0.6 294,329 - Psyr_0275 0.87 -0.8 294,436 + -0.2 294,437 - +0.7 294,463 + +0.7 294,464 - -0.7 294,485 + -0.5 294,485 + +0.2 294,485 + +0.3 294,485 + +0.1 294,485 + -1.0 294,485 + +0.9 294,485 + -0.6 294,485 + -0.2 294,486 - +0.6 294,486 - +1.0 294,486 - -1.2 294,486 - -1.3 294,486 - -0.4 294,486 - +0.7 294,504 + -0.0 294,526 + -0.5 294,598 - Psyr_0276 0.17 -1.9 294,598 - Psyr_0276 0.17 +1.2 294,598 - Psyr_0276 0.17 +0.8 294,683 + Psyr_0276 0.34 -0.2 294,683 + Psyr_0276 0.34 -0.2 294,976 - +0.2 295,016 + +0.4 295,016 + -0.3 295,016 + +0.8 295,016 + +0.8 295,017 - +0.3 295,017 - -0.3 295,017 - -0.3 295,213 + Psyr_0277 0.27 +1.4 295,213 + Psyr_0277 0.27 -0.8 295,213 + Psyr_0277 0.27 +1.0 295,213 + Psyr_0277 0.27 +0.2 295,213 + Psyr_0277 0.27 -0.6 295,214 - Psyr_0277 0.27 -1.6 295,460 + Psyr_0277 0.58 +1.0 295,461 - Psyr_0277 0.58 -1.4 295,480 + Psyr_0277 0.61 -0.7 295,481 - Psyr_0277 0.61 -1.0 295,681 + Psyr_0277 0.86 +0.0 295,681 + Psyr_0277 0.86 -1.0 295,681 + Psyr_0277 0.86 -0.4 295,681 + Psyr_0277 0.86 -0.2 295,681 + Psyr_0277 0.86 -0.9 295,682 - Psyr_0277 0.86 -0.5 295,682 - Psyr_0277 0.86 -1.0 295,682 - Psyr_0277 0.86 -0.8 295,682 - Psyr_0277 0.86 -0.7 295,682 - Psyr_0277 0.86 +0.5 295,682 - Psyr_0277 0.86 -0.6 295,776 + +0.4 295,776 + +0.4 295,776 + +0.6 295,777 - +0.1 295,777 - +0.4 295,794 + -1.4 295,795 - +1.4 295,795 - -1.6 295,799 + +1.4 295,799 + +0.4 295,799 + -1.1 295,800 - +0.4 295,800 - +0.1 295,800 - +0.1 295,800 - +0.6 295,800 - +0.3 295,800 - +0.4 295,800 - +0.5 295,800 - +0.6 295,800 - -0.8 295,800 - +0.2 295,877 + Psyr_0278 0.12 +2.4 295,877 + Psyr_0278 0.12 -0.6 295,878 - Psyr_0278 0.12 +0.3 295,878 - Psyr_0278 0.12 -0.5 295,878 - Psyr_0278 0.12 -2.5 295,878 - Psyr_0278 0.12 -0.7 296,278 + Psyr_0278 0.63 +0.2 296,278 + Psyr_0278 0.63 +0.4 296,278 + Psyr_0278 0.63 +2.0 296,278 + Psyr_0278 0.63 -1.4 296,278 + Psyr_0278 0.63 -1.0 296,279 - Psyr_0278 0.63 +1.0 296,279 - Psyr_0278 0.63 -0.6 296,279 - Psyr_0278 0.63 -0.0 296,356 + Psyr_0278 0.73 -1.6 296,356 + Psyr_0278 0.73 +0.9 296,356 + Psyr_0278 0.73 -0.2 296,356 + Psyr_0278 0.73 -0.1 296,357 - Psyr_0278 0.73 +0.0 296,357 - Psyr_0278 0.73 +0.4 296,466 + Psyr_0278 0.87 -0.0 296,467 - Psyr_0278 0.87 +0.3 296,506 + -0.9 296,506 + +1.2 296,506 + +0.4 296,506 + -0.1 296,506 + +0.4 296,506 + +0.5 296,507 - +0.7 296,507 - -0.2 296,507 - +0.5 296,507 - -0.3 296,507 - -0.7 296,508 + -0.4 296,508 + -0.7 296,508 + -0.1 296,508 + -1.0 296,508 + +0.0 296,509 - -0.6 296,509 - -2.3 296,568 - +1.2 296,593 + +1.4 296,594 - -0.7 296,594 - +0.4 296,594 - +0.8 296,629 + +1.1 296,630 - +0.1 296,630 - -0.1 296,630 - -0.4 296,630 - -0.2
Or see this region's nucleotide sequence