Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00710

Experiment: formate McAA biotin dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA biotin dropout
137,788	+		MMJJ_RS00705	0.25	+1.1
137,820	-		MMJJ_RS00705	0.29	-0.7
137,820	-		MMJJ_RS00705	0.29	+0.5
137,821	+		MMJJ_RS00705	0.29	+0.5
137,823	-		MMJJ_RS00705	0.29	-0.2
137,823	-		MMJJ_RS00705	0.29	+0.2
137,824	+		MMJJ_RS00705	0.29	-0.8
137,842	+		MMJJ_RS00705	0.32	-0.6
137,849	-		MMJJ_RS00705	0.32	-0.6
137,878	+		MMJJ_RS00705	0.36	+0.1
137,959	+		MMJJ_RS00705	0.46	+0.0
138,015	-		MMJJ_RS00705	0.53	+0.9
138,016	+		MMJJ_RS00705	0.53	-2.3
138,016	+		MMJJ_RS00705	0.53	-2.4
138,016	+		MMJJ_RS00705	0.53	+0.2
138,016	+		MMJJ_RS00705	0.53	+0.6
138,016	+		MMJJ_RS00705	0.53	+0.5
138,150	-		MMJJ_RS00705	0.69	-0.6
138,150	-		MMJJ_RS00705	0.69	-0.5
138,159	-		MMJJ_RS00705	0.70	-0.0
138,160	+		MMJJ_RS00705	0.70	+1.0
138,198	+		MMJJ_RS00705	0.75	-0.1
138,222	-		MMJJ_RS00705	0.78	-2.7
138,227	-		MMJJ_RS00705	0.78	+1.0
138,228	+		MMJJ_RS00705	0.78	-0.1
138,228	+		MMJJ_RS00705	0.78	-1.0
138,240	-		MMJJ_RS00705	0.80	-0.3
138,252	+		MMJJ_RS00705	0.81	+0.9
138,272	-		MMJJ_RS00705	0.84	+0.8
138,403	+				+1.5
138,420	-				+0.6
138,420	-				-1.6
138,420	-				-0.2
138,420	-				+0.1
138,421	+				+0.1
138,421	+				+0.3
138,421	+				-1.7
138,421	+				+0.3
138,421	+				+0.6
138,421	+				+0.1
138,422	-				-0.2
138,422	-				-0.1
138,422	-				-0.1
138,422	-				+0.3
138,422	-				-0.8
138,423	+				+0.0
138,423	+				+0.0
138,423	+				+0.2
138,423	+				+0.4
138,424	-				-1.0
138,424	-				-0.0
138,424	-				+0.7
138,424	-				-0.7
138,424	-				-1.3
138,424	-				+0.2
138,425	+				-0.2
138,425	+				+0.1
138,425	+				-2.3
138,425	+				+0.3
138,425	+				+0.3
138,425	+				-0.1
138,425	+				+0.5
138,425	+				+0.6
138,425	+				+0.2
138,466	+				-0.5
138,493	+				+0.6
138,499	-				-1.0
138,499	-				-0.8
138,499	-				-0.7
138,499	-				+0.9
138,500	+				-0.2
138,500	+				+0.6
138,500	+				+0.4
138,504	-				+0.5
138,508	-				-0.0
138,511	-				+0.1
138,514	+				-1.1
138,652	-				-0.3
138,653	+				-0.3
138,653	+				-0.7
138,657	-				+0.6
138,657	-				+0.4
138,667	-				+0.3
138,672	-				+0.6
138,672	-				+0.6
138,672	-				+0.1
138,672	-				-1.0
138,672	-				+0.1
138,673	+				+0.1
138,673	+				+0.6
138,675	-				-0.5
138,681	-				-0.3
138,684	-				+0.4
138,684	-				-0.5
138,685	+				+0.1
138,693	-				-1.1
138,695	-				+0.5
138,695	-				+0.7
138,715	-				+0.3
138,715	-				+0.2
138,715	-				-0.6
138,716	+				+0.7
138,716	+				-2.5
138,716	+				-0.5
138,719	+				+0.7
138,719	+				+0.2
138,724	+				-0.0
138,795	-				-0.1
138,795	-				+0.0
138,795	-				-0.3
138,801	-		MMJJ_RS00710	0.10	+0.4
138,814	-		MMJJ_RS00710	0.13	-0.1
138,814	-		MMJJ_RS00710	0.13	+1.3
138,814	-		MMJJ_RS00710	0.13	-0.1
138,814	-		MMJJ_RS00710	0.13	-0.3
138,814	-		MMJJ_RS00710	0.13	-0.4
138,815	+		MMJJ_RS00710	0.13	+0.1
138,815	+		MMJJ_RS00710	0.13	+0.2
138,851	-		MMJJ_RS00710	0.21	-0.0
138,867	-				+1.0
138,867	-		MMJJ_RS00710	0.24	-0.4
138,868	+		MMJJ_RS00710	0.24	+0.2
138,868	+		MMJJ_RS00710	0.24	-2.0
138,868	+		MMJJ_RS00710	0.24	-1.3
138,873	-		MMJJ_RS00710	0.25	-1.4
138,874	+		MMJJ_RS00710	0.25	-0.1
138,874	+		MMJJ_RS00710	0.25	+0.3
138,874	+		MMJJ_RS00710	0.25	-1.1
138,874	+		MMJJ_RS00710	0.25	-2.0
138,919	-		MMJJ_RS00710	0.35	-0.3
138,947	-		MMJJ_RS00710	0.41	-0.0
138,947	-		MMJJ_RS00710	0.41	-0.3
138,952	+		MMJJ_RS00710	0.42	-0.2
138,982	-		MMJJ_RS00710	0.48	-0.5
138,982	-		MMJJ_RS00710	0.48	-0.7
138,983	+		MMJJ_RS00710	0.48	+0.1
139,001	+		MMJJ_RS00710	0.52	-0.5
139,078	+		MMJJ_RS00710	0.68	-1.9
139,082	+		MMJJ_RS00710	0.69	+0.6
139,096	+		MMJJ_RS00710	0.72	+0.6
139,151	+		MMJJ_RS00710	0.83	+0.2
139,151	+		MMJJ_RS00710	0.83	-0.3
139,152	-		MMJJ_RS00710	0.83	-2.3
139,153	+		MMJJ_RS00710	0.84	-0.2
139,153	+		MMJJ_RS00710	0.84	-0.9
139,156	-		MMJJ_RS00710	0.84	-0.3
139,157	+		MMJJ_RS00710	0.84	-1.0
139,172	-		MMJJ_RS00710	0.88	+0.2
139,172	-		MMJJ_RS00710	0.88	-1.9
139,172	-		MMJJ_RS00710	0.88	-0.4
139,172	-		MMJJ_RS00710	0.88	+0.4
139,173	+		MMJJ_RS00710	0.88	+0.6
139,173	+		MMJJ_RS00710	0.88	+0.0
139,186	+				-0.1
139,201	-				+0.3
139,201	-				+0.4
139,202	+				-0.1
139,203	-				+0.3
139,203	-				+0.4
139,203	-				-0.8
139,203	-				-2.2
139,203	-				-0.2
139,204	+				+0.5
139,204	+				+0.3
139,204	+				+1.1
139,204	+				-0.6
139,262	-				+0.0
139,262	-				-0.5
139,262	-				+0.6
139,263	+				-0.6
139,263	+				-0.6
139,263	+				-0.1
139,265	-				-0.5
139,265	-				+0.4
139,371	+		MMJJ_RS00715	0.18	-1.0
139,374	-		MMJJ_RS00715	0.18	+0.5
139,375	+		MMJJ_RS00715	0.18	-2.8
139,402	-		MMJJ_RS00715	0.23	-1.1
139,435	-		MMJJ_RS00715	0.28	-0.4
139,436	+		MMJJ_RS00715	0.28	-1.6
139,459	-		MMJJ_RS00715	0.32	-0.6
139,460	+		MMJJ_RS00715	0.32	+0.6
139,460	+		MMJJ_RS00715	0.32	-0.6
139,460	+		MMJJ_RS00715	0.32	-1.4
139,484	-		MMJJ_RS00715	0.36	-0.4
139,485	+		MMJJ_RS00715	0.36	+0.6
139,549	+		MMJJ_RS00715	0.46	+0.1
139,589	+		MMJJ_RS00715	0.52	-1.2
139,600	-		MMJJ_RS00715	0.54	-0.1
139,690	+		MMJJ_RS00715	0.68	-0.8
139,717	+		MMJJ_RS00715	0.73	+0.8
139,720	-		MMJJ_RS00715	0.73	-0.5
139,723	-		MMJJ_RS00715	0.74	+0.6
139,723	-		MMJJ_RS00715	0.74	+0.7
139,726	+		MMJJ_RS00715	0.74	-0.3
139,755	-		MMJJ_RS00715	0.79	-0.3
139,756	+		MMJJ_RS00715	0.79	+0.5
139,762	+		MMJJ_RS00715	0.80	+0.4
139,767	+		MMJJ_RS00715	0.81	+0.2
139,789	+		MMJJ_RS00715	0.84	+0.8
139,789	+		MMJJ_RS00715	0.84	+1.0
139,841	+				+0.1
139,849	-				+0.9
139,854	+				-0.1
139,856	-				-0.3
139,859	+				-0.7
139,879	-				-0.6
139,919	+				-0.9
139,924	+				+0.5
139,936	+				+1.3
139,942	-				+0.5
139,946	-				+0.3
139,946	-				-1.1
139,946	-				+0.4
139,962	+				-0.3
139,963	-				-0.6
139,963	-				-0.2
139,964	+				-1.1
139,964	+				-0.1
140,001	-				-1.1
140,001	-				+0.5
140,002	+				+0.4
140,002	+				-0.4
140,002	+				-0.7
140,022	-				-0.3
140,056	+		MMJJ_RS00720	0.10	+0.2
140,118	-		MMJJ_RS00720	0.15	+0.1
140,118	-		MMJJ_RS00720	0.15	-1.3
140,119	+		MMJJ_RS00720	0.15	+0.2
140,120	-		MMJJ_RS00720	0.15	-0.9