Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2554

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,896,051	+				-0.4
2,896,051	+				+1.3
2,896,051	+				+0.6
2,896,052	-				+1.0
2,896,052	-				-0.0
2,896,065	-				-0.3
2,896,079	+				+1.9
2,896,079	+				+0.3
2,896,079	+				-1.0
2,896,079	+				+0.5
2,896,080	-				-2.0
2,896,102	-				-1.0
2,896,102	-				-0.0
2,896,171	+				-0.0
2,896,171	+				-1.9
2,896,172	-				+1.1
2,896,172	-				-1.3
2,896,851	+				-1.0
2,896,852	-				-0.9
2,896,852	-				-1.3
2,896,955	+				+0.0
2,896,955	+				+0.4
2,897,046	+		Pf1N1B4_2554	0.13	+0.3
2,897,046	+		Pf1N1B4_2554	0.13	+0.9
2,897,046	+		Pf1N1B4_2554	0.13	-0.9
2,897,047	-		Pf1N1B4_2554	0.13	-2.3
2,897,047	-		Pf1N1B4_2554	0.13	-0.3
2,897,047	-				+0.7
2,897,057	+		Pf1N1B4_2554	0.16	-0.1
2,897,058	-		Pf1N1B4_2554	0.17	-0.3
2,897,058	-				-0.3
2,897,058	-		Pf1N1B4_2554	0.17	+1.3
2,897,154	+		Pf1N1B4_2554	0.45	+0.2
2,897,154	+		Pf1N1B4_2554	0.45	+1.3
2,897,155	-		Pf1N1B4_2554	0.45	+0.1
2,897,173	-		Pf1N1B4_2554	0.50	+0.9
2,897,222	-		Pf1N1B4_2554	0.65	-1.5
2,897,234	-		Pf1N1B4_2554	0.68	+0.8
2,897,269	+		Pf1N1B4_2554	0.79	-0.1
2,897,285	+		Pf1N1B4_2554	0.83	-1.9
2,897,285	+		Pf1N1B4_2554	0.83	+0.0
2,897,285	+		Pf1N1B4_2554	0.83	-1.3
2,897,285	+		Pf1N1B4_2554	0.83	+1.3
2,897,285	+		Pf1N1B4_2554	0.83	-0.7
2,897,285	+		Pf1N1B4_2554	0.83	-0.0
2,897,285	+		Pf1N1B4_2554	0.83	-0.5
2,897,286	-		Pf1N1B4_2554	0.84	-0.4
2,897,286	-		Pf1N1B4_2554	0.84	+1.9
2,897,286	-		Pf1N1B4_2554	0.84	-1.3
2,897,286	-		Pf1N1B4_2554	0.84	+0.6
2,897,317	-				+1.3
2,897,317	-				+0.3
2,897,334	+				-0.1
2,897,377	-				-2.2
2,897,387	+				-1.0
2,897,436	+				-0.8
2,897,437	-				-0.9
2,897,437	-				-1.7
2,897,437	-				-0.0
2,897,437	-				-0.5
2,897,533	+		Pf1N1B4_2555	0.14	+0.0
2,897,533	+				-1.0
2,897,534	-		Pf1N1B4_2555	0.14	+1.3
2,897,534	-		Pf1N1B4_2555	0.14	+1.3
2,897,568	+		Pf1N1B4_2555	0.18	-0.3
2,897,568	+		Pf1N1B4_2555	0.18	+0.3
2,897,568	+		Pf1N1B4_2555	0.18	+0.2
2,897,568	+		Pf1N1B4_2555	0.18	-0.3
2,897,568	+		Pf1N1B4_2555	0.18	-0.4
2,897,569	-		Pf1N1B4_2555	0.18	-0.9
2,897,569	-		Pf1N1B4_2555	0.18	+0.7
2,897,569	-		Pf1N1B4_2555	0.18	-0.9
2,897,569	-		Pf1N1B4_2555	0.18	-1.5
2,897,569	-		Pf1N1B4_2555	0.18	+1.3
2,897,739	+		Pf1N1B4_2555	0.39	-0.0
2,897,739	+		Pf1N1B4_2555	0.39	-0.0
2,897,739	+		Pf1N1B4_2555	0.39	-1.3
2,897,739	+		Pf1N1B4_2555	0.39	-0.6
2,897,740	-		Pf1N1B4_2555	0.40	+0.6
2,897,740	-		Pf1N1B4_2555	0.40	-0.0
2,897,755	-				-0.7
2,897,757	+		Pf1N1B4_2555	0.42	-0.2
2,897,757	+		Pf1N1B4_2555	0.42	+0.9
2,897,757	+		Pf1N1B4_2555	0.42	+0.1
2,897,757	+		Pf1N1B4_2555	0.42	-0.5
2,897,757	+		Pf1N1B4_2555	0.42	-0.9
2,897,757	+		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.7
2,897,758	-		Pf1N1B4_2555	0.42	+1.8
2,897,758	-		Pf1N1B4_2555	0.42	+0.3
2,897,758	-		Pf1N1B4_2555	0.42	-2.0
2,897,758	-		Pf1N1B4_2555	0.42	+1.3
2,897,758	-		Pf1N1B4_2555	0.42	+1.3
2,897,758	-		Pf1N1B4_2555	0.42	+0.3
2,897,758	-		Pf1N1B4_2555	0.42	-0.8
2,897,758	-		Pf1N1B4_2555	0.42	+0.1
2,897,758	-		Pf1N1B4_2555	0.42	-0.5
2,897,758	-		Pf1N1B4_2555	0.42	-1.2
2,898,292	+				-0.7
2,898,292	+				-2.8
2,898,293	-				+0.3
2,898,293	-				-1.4