Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02200 and ABZR87_RS02205 are separated by 10 nucleotides ABZR87_RS02205 and ABZR87_RS02210 are separated by 24 nucleotides ABZR87_RS02210 and ABZR87_RS02215 are separated by 31 nucleotides ABZR87_RS02215 and ABZR87_RS02220 are separated by 411 nucleotides
ABZR87_RS02200: ABZR87_RS02200 - hypothetical protein, at 473,113 to 473,502
_RS02200
ABZR87_RS02205: ABZR87_RS02205 - hypothetical protein, at 473,513 to 473,854
_RS02205
ABZR87_RS02210: ABZR87_RS02210 - lytic transglycosylase domain-containing protein, at 473,879 to 474,352
_RS02210
ABZR87_RS02215: ABZR87_RS02215 - flagellar protein FliT, at 474,384 to 474,761
_RS02215
ABZR87_RS02220: ABZR87_RS02220 - redox-regulated ATPase YchF, at 475,173 to 476,267
_RS02220
Position (kb) 474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 473.384 kb on - strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.473 kb on + strand at 473.473 kb on + strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.500 kb on + strand at 473.500 kb on + strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.637 kb on - strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.852 kb on + strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.999 kb on + strand, within ABZR87_RS02210 at 473.999 kb on + strand, within ABZR87_RS02210 at 473.999 kb on + strand, within ABZR87_RS02210 at 474.000 kb on - strand, within ABZR87_RS02210 at 474.000 kb on - strand, within ABZR87_RS02210 at 474.260 kb on + strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.406 kb on + strand at 474.406 kb on + strand at 474.688 kb on + strand, within ABZR87_RS02215 at 474.688 kb on + strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.809 kb on + strand at 474.809 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.954 kb on + strand at 474.954 kb on + strand at 474.955 kb on - strand at 474.969 kb on + strand at 474.970 kb on - strand at 474.970 kb on - strand at 474.977 kb on - strand at 475.072 kb on - strand at 475.214 kb on + strand at 475.214 kb on + strand at 475.215 kb on - strand at 475.266 kb on + strand at 475.267 kb on - strand at 475.267 kb on - strand at 475.586 kb on + strand, within ABZR87_RS02220 at 475.587 kb on - strand, within ABZR87_RS02220 at 475.611 kb on + strand, within ABZR87_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 473,384 - ABZR87_RS02200 0.69 -0.9 473,431 + ABZR87_RS02200 0.82 +0.2 473,431 + ABZR87_RS02200 0.82 -0.5 473,431 + ABZR87_RS02200 0.82 -0.4 473,431 + ABZR87_RS02200 0.82 +0.2 473,432 - ABZR87_RS02200 0.82 -1.9 473,432 - ABZR87_RS02200 0.82 -0.4 473,432 - ABZR87_RS02200 0.82 -0.3 473,473 + +0.9 473,473 + -2.2 473,474 - -1.6 473,474 - +0.8 473,474 - -1.2 473,474 - -0.8 473,500 + -0.2 473,500 + -1.0 473,501 - -1.6 473,501 - +0.8 473,501 - +0.4 473,501 - +1.3 473,518 + -1.1 473,518 + -1.5 473,518 + +0.7 473,518 + +0.4 473,518 + +1.1 473,518 + -0.0 473,518 + +0.7 473,518 + -0.5 473,518 + -1.4 473,519 - +0.3 473,519 - +0.7 473,519 - -0.1 473,519 - +0.1 473,519 - +1.7 473,519 - -0.7 473,519 - -1.1 473,519 - -1.3 473,519 - -0.3 473,637 - ABZR87_RS02205 0.36 -1.2 473,807 + ABZR87_RS02205 0.86 -1.0 473,807 + ABZR87_RS02205 0.86 -0.8 473,807 + ABZR87_RS02205 0.86 -0.3 473,807 + ABZR87_RS02205 0.86 +0.1 473,807 + ABZR87_RS02205 0.86 +1.5 473,807 + ABZR87_RS02205 0.86 -2.1 473,807 + ABZR87_RS02205 0.86 +0.0 473,808 - ABZR87_RS02205 0.86 -0.5 473,808 - ABZR87_RS02205 0.86 -0.7 473,808 - ABZR87_RS02205 0.86 +0.1 473,808 - ABZR87_RS02205 0.86 -0.3 473,808 - ABZR87_RS02205 0.86 +0.4 473,808 - ABZR87_RS02205 0.86 +0.4 473,808 - ABZR87_RS02205 0.86 +0.4 473,808 - ABZR87_RS02205 0.86 -0.4 473,808 - ABZR87_RS02205 0.86 -0.2 473,808 - ABZR87_RS02205 0.86 +0.6 473,808 - ABZR87_RS02205 0.86 -0.5 473,808 - ABZR87_RS02205 0.86 +0.4 473,808 - ABZR87_RS02205 0.86 -1.5 473,852 + +0.9 473,852 + -0.1 473,852 + +0.9 473,852 + +1.1 473,853 - -1.1 473,853 - -0.1 473,853 - +0.2 473,853 - +0.6 473,999 + ABZR87_RS02210 0.25 -0.1 473,999 + ABZR87_RS02210 0.25 +0.1 473,999 + ABZR87_RS02210 0.25 +0.1 474,000 - ABZR87_RS02210 0.26 -1.3 474,000 - ABZR87_RS02210 0.26 -0.7 474,260 + ABZR87_RS02210 0.80 -0.0 474,261 - ABZR87_RS02210 0.81 +0.6 474,261 - ABZR87_RS02210 0.81 -0.6 474,293 + ABZR87_RS02210 0.87 +0.3 474,293 + ABZR87_RS02210 0.87 +0.9 474,294 - ABZR87_RS02210 0.88 +0.7 474,294 - ABZR87_RS02210 0.88 -1.2 474,294 - ABZR87_RS02210 0.88 -1.2 474,388 + +0.6 474,388 + +0.9 474,388 + -1.8 474,388 + +1.2 474,389 - +0.3 474,389 - +0.0 474,389 - +0.0 474,389 - +0.9 474,391 + +1.6 474,391 + +0.1 474,391 + +0.2 474,392 - +1.6 474,392 - -0.7 474,392 - +0.9 474,392 - -1.5 474,406 + +0.4 474,406 + +0.1 474,688 + ABZR87_RS02215 0.80 +1.3 474,688 + ABZR87_RS02215 0.80 +0.8 474,689 - ABZR87_RS02215 0.81 -0.2 474,689 - ABZR87_RS02215 0.81 -0.2 474,722 + ABZR87_RS02215 0.89 -0.9 474,722 + ABZR87_RS02215 0.89 +0.3 474,723 - ABZR87_RS02215 0.90 -0.3 474,723 - ABZR87_RS02215 0.90 +0.6 474,723 - ABZR87_RS02215 0.90 -0.6 474,809 + +1.1 474,809 - +0.8 474,810 - -0.4 474,810 - +0.2 474,810 - +0.3 474,954 + -0.3 474,954 + +2.2 474,955 - +1.3 474,969 + +0.9 474,970 - +0.1 474,970 - +0.7 474,977 - -0.1 475,072 - -0.3 475,214 + -3.2 475,214 + -0.6 475,215 - -0.0 475,266 + -0.3 475,267 - -2.5 475,267 - -2.2 475,586 + ABZR87_RS02220 0.38 -0.3 475,587 - ABZR87_RS02220 0.38 -2.6 475,611 + ABZR87_RS02220 0.40 -1.9
Or see this region's nucleotide sequence