Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5986

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5985 and Pf1N1B4_5986 are separated by 150 nucleotidesPf1N1B4_5986 and Pf1N1B4_5987 are separated by 41 nucleotidesPf1N1B4_5987 and Pf1N1B4_5988 overlap by 4 nucleotides Pf1N1B4_5985 - FIG002465: BNR repeat protein, at 436,659 to 437,747 _5985 Pf1N1B4_5986 - FIG002188: hypothetical protein, at 437,898 to 439,256 _5986 Pf1N1B4_5987 - FIG067310: hypothetical protein, at 439,298 to 440,068 _5987 Pf1N1B4_5988 - FIG067310: hypothetical protein, at 440,065 to 440,580 _5988 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.008 kb on + strand, within Pf1N1B4_5985at 437.009 kb on - strand, within Pf1N1B4_5985at 437.084 kb on - strand, within Pf1N1B4_5985at 437.084 kb on - strand, within Pf1N1B4_5985at 437.215 kb on + strand, within Pf1N1B4_5985at 437.666 kb on - strandat 437.697 kb on + strandat 437.697 kb on + strandat 437.697 kb on + strandat 437.728 kb on + strandat 437.729 kb on - strandat 437.729 kb on - strandat 437.738 kb on - strandat 437.747 kb on + strandat 437.963 kb on - strandat 437.963 kb on - strandat 437.963 kb on - strandat 437.963 kb on - strandat 438.005 kb on - strandat 438.005 kb on - strandat 438.005 kb on - strandat 438.025 kb on + strandat 438.026 kb on - strandat 438.026 kb on - strandat 438.026 kb on - strandat 438.026 kb on - strandat 438.065 kb on - strand, within Pf1N1B4_5986at 438.065 kb on - strand, within Pf1N1B4_5986at 438.097 kb on + strand, within Pf1N1B4_5986at 438.118 kb on + strand, within Pf1N1B4_5986at 438.119 kb on - strand, within Pf1N1B4_5986at 438.160 kb on + strand, within Pf1N1B4_5986at 438.160 kb on + strand, within Pf1N1B4_5986at 438.161 kb on - strand, within Pf1N1B4_5986at 438.178 kb on + strand, within Pf1N1B4_5986at 438.178 kb on + strand, within Pf1N1B4_5986at 438.178 kb on + strand, within Pf1N1B4_5986at 438.179 kb on - strand, within Pf1N1B4_5986at 438.179 kb on - strand, within Pf1N1B4_5986at 438.299 kb on - strand, within Pf1N1B4_5986at 438.310 kb on + strand, within Pf1N1B4_5986at 438.310 kb on + strand, within Pf1N1B4_5986at 438.311 kb on - strand, within Pf1N1B4_5986at 438.311 kb on - strand, within Pf1N1B4_5986at 438.311 kb on - strand, within Pf1N1B4_5986at 438.320 kb on - strand, within Pf1N1B4_5986at 438.400 kb on + strand, within Pf1N1B4_5986at 438.484 kb on + strand, within Pf1N1B4_5986at 438.571 kb on + strandat 438.592 kb on + strand, within Pf1N1B4_5986at 438.592 kb on + strand, within Pf1N1B4_5986at 438.593 kb on - strand, within Pf1N1B4_5986at 438.593 kb on - strand, within Pf1N1B4_5986at 438.593 kb on - strand, within Pf1N1B4_5986at 438.710 kb on - strand, within Pf1N1B4_5986at 438.710 kb on - strand, within Pf1N1B4_5986at 438.710 kb on - strand, within Pf1N1B4_5986at 438.710 kb on - strandat 438.804 kb on + strandat 438.804 kb on + strandat 438.805 kb on - strand, within Pf1N1B4_5986at 439.097 kb on - strand, within Pf1N1B4_5986at 439.262 kb on + strandat 439.262 kb on + strandat 439.262 kb on + strandat 439.395 kb on + strand, within Pf1N1B4_5987at 439.395 kb on + strand, within Pf1N1B4_5987at 439.512 kb on + strand, within Pf1N1B4_5987at 439.513 kb on - strand, within Pf1N1B4_5987at 439.530 kb on + strand, within Pf1N1B4_5987at 439.539 kb on + strand, within Pf1N1B4_5987at 439.540 kb on - strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.567 kb on - strand, within Pf1N1B4_5987at 439.567 kb on - strandat 439.737 kb on + strand, within Pf1N1B4_5987at 439.737 kb on + strand, within Pf1N1B4_5987at 439.737 kb on + strand, within Pf1N1B4_5987at 439.798 kb on - strand, within Pf1N1B4_5987at 439.800 kb on + strand, within Pf1N1B4_5987at 439.800 kb on + strand, within Pf1N1B4_5987at 439.801 kb on - strand, within Pf1N1B4_5987at 439.996 kb on + strandat 440.120 kb on + strand, within Pf1N1B4_5988

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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437,008 + Pf1N1B4_5985 0.32 +0.3
437,009 - Pf1N1B4_5985 0.32 +0.7
437,084 - Pf1N1B4_5985 0.39 +0.2
437,084 - Pf1N1B4_5985 0.39 +1.0
437,215 + Pf1N1B4_5985 0.51 +1.3
437,666 - +0.7
437,697 + -0.6
437,697 + +0.7
437,697 + -0.2
437,728 + -1.3
437,729 - -1.3
437,729 - -0.7
437,738 - -0.9
437,747 + -0.2
437,963 - -0.7
437,963 - -0.1
437,963 - -1.1
437,963 - -0.7
438,005 - -0.7
438,005 - -0.7
438,005 - +0.2
438,025 + +1.3
438,026 - +0.1
438,026 - +0.3
438,026 - +2.0
438,026 - -0.0
438,065 - Pf1N1B4_5986 0.12 -1.7
438,065 - Pf1N1B4_5986 0.12 -0.9
438,097 + Pf1N1B4_5986 0.15 +1.0
438,118 + Pf1N1B4_5986 0.16 -0.3
438,119 - Pf1N1B4_5986 0.16 +1.0
438,160 + Pf1N1B4_5986 0.19 -1.7
438,160 + Pf1N1B4_5986 0.19 +0.2
438,161 - Pf1N1B4_5986 0.19 +0.8
438,178 + Pf1N1B4_5986 0.21 +0.7
438,178 + Pf1N1B4_5986 0.21 +0.7
438,178 + Pf1N1B4_5986 0.21 -0.7
438,179 - Pf1N1B4_5986 0.21 -0.1
438,179 - Pf1N1B4_5986 0.21 +0.4
438,299 - Pf1N1B4_5986 0.30 +0.6
438,310 + Pf1N1B4_5986 0.30 -2.5
438,310 + Pf1N1B4_5986 0.30 +0.2
438,311 - Pf1N1B4_5986 0.30 -0.3
438,311 - Pf1N1B4_5986 0.30 +2.5
438,311 - Pf1N1B4_5986 0.30 +1.4
438,320 - Pf1N1B4_5986 0.31 +0.9
438,400 + Pf1N1B4_5986 0.37 +0.5
438,484 + Pf1N1B4_5986 0.43 +0.4
438,571 + +1.9
438,592 + Pf1N1B4_5986 0.51 +0.8
438,592 + Pf1N1B4_5986 0.51 +1.0
438,593 - Pf1N1B4_5986 0.51 -0.7
438,593 - Pf1N1B4_5986 0.51 -1.3
438,593 - Pf1N1B4_5986 0.51 -0.1
438,710 - Pf1N1B4_5986 0.60 +1.3
438,710 - Pf1N1B4_5986 0.60 +1.9
438,710 - Pf1N1B4_5986 0.60 +0.3
438,710 - +1.1
438,804 + -0.3
438,804 + +1.7
438,805 - Pf1N1B4_5986 0.67 +2.3
439,097 - Pf1N1B4_5986 0.88 +0.0
439,262 + +1.0
439,262 + -1.5
439,262 + +0.7
439,395 + Pf1N1B4_5987 0.13 +0.4
439,395 + Pf1N1B4_5987 0.13 +0.3
439,512 + Pf1N1B4_5987 0.28 +0.3
439,513 - Pf1N1B4_5987 0.28 +1.4
439,530 + Pf1N1B4_5987 0.30 +2.3
439,539 + Pf1N1B4_5987 0.31 -0.0
439,540 - Pf1N1B4_5987 0.31 +1.1
439,566 + Pf1N1B4_5987 0.35 +0.9
439,566 + Pf1N1B4_5987 0.35 +0.3
439,566 + Pf1N1B4_5987 0.35 +1.3
439,566 + Pf1N1B4_5987 0.35 +0.3
439,566 + Pf1N1B4_5987 0.35 -0.0
439,567 - Pf1N1B4_5987 0.35 +0.7
439,567 - -0.3
439,737 + Pf1N1B4_5987 0.57 -0.3
439,737 + Pf1N1B4_5987 0.57 +0.3
439,737 + Pf1N1B4_5987 0.57 -0.8
439,798 - Pf1N1B4_5987 0.65 +0.1
439,800 + Pf1N1B4_5987 0.65 -1.1
439,800 + Pf1N1B4_5987 0.65 +0.0
439,801 - Pf1N1B4_5987 0.65 -1.3
439,996 + -1.3
440,120 + Pf1N1B4_5988 0.11 -0.3

Or see this region's nucleotide sequence