Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5805 and Pf1N1B4_5806 overlap by 2 nucleotides Pf1N1B4_5806 and Pf1N1B4_5807 are separated by 176 nucleotides Pf1N1B4_5807 and Pf1N1B4_5808 are separated by 116 nucleotides
Pf1N1B4_5805 - Muconate cycloisomerase (EC 5.5.1.1), at 239,253 to 240,542
_5805
Pf1N1B4_5806 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 240,541 to 241,443
_5806
Pf1N1B4_5807 - FIG00962118: hypothetical protein, at 241,620 to 241,871
_5807
Pf1N1B4_5808 - Uricase (urate oxidase) (EC 1.7.3.3), at 241,988 to 242,887
_5808
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 240.483 kb on - strand at 240.562 kb on + strand at 240.844 kb on + strand, within Pf1N1B4_5806 at 240.844 kb on + strand, within Pf1N1B4_5806 at 240.844 kb on + strand, within Pf1N1B4_5806 at 240.845 kb on - strand, within Pf1N1B4_5806 at 240.845 kb on - strand, within Pf1N1B4_5806 at 240.845 kb on - strand, within Pf1N1B4_5806 at 241.175 kb on - strand, within Pf1N1B4_5806 at 241.235 kb on + strand at 241.235 kb on + strand at 241.236 kb on - strand, within Pf1N1B4_5806 at 241.236 kb on - strand, within Pf1N1B4_5806 at 241.367 kb on + strand at 241.367 kb on + strand at 241.367 kb on + strand at 241.367 kb on + strand at 241.368 kb on - strand at 241.368 kb on - strand at 241.368 kb on - strand at 241.510 kb on - strand at 241.510 kb on - strand at 241.527 kb on + strand at 241.528 kb on - strand at 241.528 kb on - strand at 241.695 kb on - strand, within Pf1N1B4_5807 at 241.695 kb on - strand, within Pf1N1B4_5807 at 241.918 kb on + strand at 241.918 kb on + strand at 241.918 kb on + strand at 241.919 kb on - strand at 241.919 kb on - strand at 241.919 kb on - strand at 241.963 kb on + strand at 242.103 kb on + strand, within Pf1N1B4_5808 at 242.104 kb on - strand, within Pf1N1B4_5808 at 242.166 kb on + strand, within Pf1N1B4_5808 at 242.167 kb on - strand, within Pf1N1B4_5808 at 242.216 kb on + strand, within Pf1N1B4_5808 at 242.296 kb on + strand, within Pf1N1B4_5808 at 242.369 kb on + strand at 242.369 kb on + strand, within Pf1N1B4_5808 at 242.370 kb on - strand, within Pf1N1B4_5808 at 242.377 kb on + strand, within Pf1N1B4_5808 at 242.378 kb on - strand, within Pf1N1B4_5808 at 242.378 kb on - strand, within Pf1N1B4_5808 at 242.405 kb on - strand, within Pf1N1B4_5808 at 242.415 kb on + strand, within Pf1N1B4_5808
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 240,483 - -0.9 240,562 + +1.1 240,844 + Pf1N1B4_5806 0.34 -0.2 240,844 + Pf1N1B4_5806 0.34 +1.1 240,844 + Pf1N1B4_5806 0.34 +0.3 240,845 - Pf1N1B4_5806 0.34 +0.4 240,845 - Pf1N1B4_5806 0.34 +0.4 240,845 - Pf1N1B4_5806 0.34 -0.1 241,175 - Pf1N1B4_5806 0.70 +0.5 241,235 + -0.3 241,235 + +2.2 241,236 - Pf1N1B4_5806 0.77 +1.2 241,236 - Pf1N1B4_5806 0.77 +0.2 241,367 + -0.1 241,367 + -0.3 241,367 + -1.3 241,367 + -0.3 241,368 - +0.2 241,368 - -0.5 241,368 - -0.2 241,510 - +0.7 241,510 - -1.7 241,527 + +0.1 241,528 - +0.1 241,528 - +2.2 241,695 - Pf1N1B4_5807 0.30 -1.9 241,695 - Pf1N1B4_5807 0.30 +0.1 241,918 + +0.4 241,918 + -2.2 241,918 + -0.2 241,919 - -0.3 241,919 - +0.4 241,919 - -1.2 241,963 + +0.1 242,103 + Pf1N1B4_5808 0.13 +1.2 242,104 - Pf1N1B4_5808 0.13 +2.0 242,166 + Pf1N1B4_5808 0.20 -0.7 242,167 - Pf1N1B4_5808 0.20 +0.8 242,216 + Pf1N1B4_5808 0.25 +0.4 242,296 + Pf1N1B4_5808 0.34 +0.2 242,369 + +0.7 242,369 + Pf1N1B4_5808 0.42 -0.0 242,370 - Pf1N1B4_5808 0.42 -0.5 242,377 + Pf1N1B4_5808 0.43 +0.7 242,378 - Pf1N1B4_5808 0.43 -0.7 242,378 - Pf1N1B4_5808 0.43 -0.0 242,405 - Pf1N1B4_5808 0.46 -0.3 242,415 + Pf1N1B4_5808 0.47 +0.5
Or see this region's nucleotide sequence