Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5673

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5671 and Pf1N1B4_5672 are separated by 20 nucleotidesPf1N1B4_5672 and Pf1N1B4_5673 are separated by 110 nucleotidesPf1N1B4_5673 and Pf1N1B4_5674 overlap by 4 nucleotides Pf1N1B4_5671 - Exoenzymes regulatory protein AepA precursor, at 107,673 to 109,862 _5671 Pf1N1B4_5672 - HTH-type transcriptional regulator hdfR, at 109,883 to 110,554 _5672 Pf1N1B4_5673 - Sterol desaturase, at 110,665 to 111,807 _5673 Pf1N1B4_5674 - Strictosidine synthase precursor (EC 4.3.3.2), at 111,804 to 112,892 _5674 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 110.216 kb on + strand, within Pf1N1B4_5672at 110.216 kb on + strand, within Pf1N1B4_5672at 110.217 kb on - strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strandat 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.222 kb on + strand, within Pf1N1B4_5672at 110.223 kb on - strand, within Pf1N1B4_5672at 110.223 kb on - strand, within Pf1N1B4_5672at 110.223 kb on - strand, within Pf1N1B4_5672at 110.223 kb on - strandat 110.223 kb on - strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.324 kb on + strand, within Pf1N1B4_5672at 110.325 kb on - strand, within Pf1N1B4_5672at 110.325 kb on - strand, within Pf1N1B4_5672at 110.325 kb on - strand, within Pf1N1B4_5672at 110.325 kb on - strand, within Pf1N1B4_5672at 110.379 kb on - strand, within Pf1N1B4_5672at 110.379 kb on - strand, within Pf1N1B4_5672at 110.379 kb on - strand, within Pf1N1B4_5672at 110.379 kb on - strand, within Pf1N1B4_5672at 110.639 kb on + strandat 110.641 kb on + strandat 110.642 kb on - strandat 110.723 kb on - strandat 110.805 kb on - strand, within Pf1N1B4_5673at 110.918 kb on - strand, within Pf1N1B4_5673at 110.971 kb on + strand, within Pf1N1B4_5673at 110.972 kb on - strand, within Pf1N1B4_5673at 111.131 kb on - strandat 111.284 kb on - strand, within Pf1N1B4_5673at 111.476 kb on - strand, within Pf1N1B4_5673at 111.616 kb on + strand, within Pf1N1B4_5673at 111.683 kb on + strand, within Pf1N1B4_5673at 111.832 kb on + strandat 111.832 kb on + strandat 111.832 kb on + strandat 111.833 kb on - strandat 111.833 kb on - strandat 111.874 kb on + strandat 111.943 kb on - strand, within Pf1N1B4_5674at 112.064 kb on + strandat 112.614 kb on + strand, within Pf1N1B4_5674at 112.614 kb on + strand, within Pf1N1B4_5674at 112.615 kb on - strandat 112.615 kb on - strand, within Pf1N1B4_5674at 112.663 kb on + strand, within Pf1N1B4_5674at 112.663 kb on + strand, within Pf1N1B4_5674at 112.788 kb on + strandat 112.788 kb on + strandat 112.788 kb on + strandat 112.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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110,216 + Pf1N1B4_5672 0.50 -0.2
110,216 + Pf1N1B4_5672 0.50 +1.2
110,217 - Pf1N1B4_5672 0.50 -0.2
110,222 + Pf1N1B4_5672 0.50 +0.7
110,222 + +0.3
110,222 + Pf1N1B4_5672 0.50 -1.0
110,222 + Pf1N1B4_5672 0.50 -0.1
110,222 + Pf1N1B4_5672 0.50 -1.5
110,222 + Pf1N1B4_5672 0.50 +0.0
110,222 + Pf1N1B4_5672 0.50 -0.4
110,222 + Pf1N1B4_5672 0.50 -1.7
110,223 - Pf1N1B4_5672 0.51 +0.4
110,223 - Pf1N1B4_5672 0.51 -0.4
110,223 - Pf1N1B4_5672 0.51 +0.6
110,223 - +2.6
110,223 - Pf1N1B4_5672 0.51 +0.6
110,324 + Pf1N1B4_5672 0.66 -1.5
110,324 + Pf1N1B4_5672 0.66 -2.7
110,324 + Pf1N1B4_5672 0.66 -1.1
110,324 + Pf1N1B4_5672 0.66 +1.2
110,324 + Pf1N1B4_5672 0.66 +0.6
110,324 + Pf1N1B4_5672 0.66 +0.0
110,325 - Pf1N1B4_5672 0.66 +1.5
110,325 - Pf1N1B4_5672 0.66 -0.4
110,325 - Pf1N1B4_5672 0.66 -1.0
110,325 - Pf1N1B4_5672 0.66 -2.2
110,379 - Pf1N1B4_5672 0.74 +0.0
110,379 - Pf1N1B4_5672 0.74 +0.6
110,379 - Pf1N1B4_5672 0.74 -1.0
110,379 - Pf1N1B4_5672 0.74 -0.3
110,639 + -0.1
110,641 + -1.0
110,642 - -0.6
110,723 - +0.0
110,805 - Pf1N1B4_5673 0.12 +0.4
110,918 - Pf1N1B4_5673 0.22 +0.0
110,971 + Pf1N1B4_5673 0.27 -0.1
110,972 - Pf1N1B4_5673 0.27 -0.5
111,131 - -0.4
111,284 - Pf1N1B4_5673 0.54 +0.8
111,476 - Pf1N1B4_5673 0.71 +1.4
111,616 + Pf1N1B4_5673 0.83 +0.9
111,683 + Pf1N1B4_5673 0.89 +0.5
111,832 + -0.5
111,832 + +0.2
111,832 + -0.4
111,833 - +1.0
111,833 - -0.4
111,874 + -0.0
111,943 - Pf1N1B4_5674 0.13 +0.6
112,064 + +1.6
112,614 + Pf1N1B4_5674 0.74 -1.0
112,614 + Pf1N1B4_5674 0.74 +0.2
112,615 - -0.4
112,615 - Pf1N1B4_5674 0.74 +0.1
112,663 + Pf1N1B4_5674 0.79 -0.4
112,663 + Pf1N1B4_5674 0.79 -0.7
112,788 + +0.6
112,788 + -0.4
112,788 + +0.6
112,788 + -2.5

Or see this region's nucleotide sequence