Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5496

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5495 and Pf1N1B4_5496 are separated by 68 nucleotides Pf1N1B4_5495 - Cyclic AMP receptor protein, at 243,236 to 243,814 _5495 Pf1N1B4_5496 - hypothetical protein, at 243,883 to 244,107 _5496 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2 3at 243.050 kb on - strandat 243.064 kb on + strandat 243.065 kb on - strandat 243.065 kb on - strandat 243.081 kb on + strandat 243.081 kb on + strandat 243.081 kb on + strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.155 kb on - strandat 243.292 kb on + strandat 243.293 kb on - strandat 243.293 kb on - strandat 243.293 kb on - strandat 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.352 kb on - strand, within Pf1N1B4_5495at 243.352 kb on - strand, within Pf1N1B4_5495at 243.360 kb on + strand, within Pf1N1B4_5495at 243.361 kb on - strand, within Pf1N1B4_5495at 243.369 kb on + strandat 243.370 kb on - strand, within Pf1N1B4_5495at 243.475 kb on - strand, within Pf1N1B4_5495at 243.583 kb on + strand, within Pf1N1B4_5495at 243.584 kb on - strand, within Pf1N1B4_5495at 243.584 kb on - strand, within Pf1N1B4_5495at 243.719 kb on - strand, within Pf1N1B4_5495at 243.790 kb on + strandat 243.791 kb on - strandat 243.791 kb on - strandat 243.834 kb on + strandat 243.834 kb on + strandat 243.835 kb on - strandat 243.835 kb on - strandat 243.922 kb on + strand, within Pf1N1B4_5496at 243.922 kb on + strand, within Pf1N1B4_5496at 243.922 kb on + strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 244.000 kb on + strand, within Pf1N1B4_5496at 244.001 kb on - strand, within Pf1N1B4_5496at 244.106 kb on - strandat 244.129 kb on - strandat 244.129 kb on - strandat 244.154 kb on + strandat 244.155 kb on - strandat 244.155 kb on - strandat 244.155 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.300 kb on + strandat 244.431 kb on - strandat 244.431 kb on - strandat 244.445 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strandat 244.888 kb on + strandat 244.888 kb on + strandat 244.888 kb on + strandat 244.945 kb on + strandat 244.970 kb on + strandat 244.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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243,050 - +0.4
243,064 + -0.3
243,065 - +0.4
243,065 - -0.4
243,081 + +0.1
243,081 + +1.0
243,081 + -1.6
243,082 - +0.0
243,082 - -0.6
243,082 - -0.0
243,082 - -0.3
243,082 - +0.5
243,082 - +0.8
243,155 - -0.2
243,292 + -1.2
243,293 - -0.1
243,293 - +0.0
243,293 - -0.6
243,296 + Pf1N1B4_5495 0.10 +0.2
243,296 + Pf1N1B4_5495 0.10 -2.1
243,296 + Pf1N1B4_5495 0.10 -1.4
243,296 + Pf1N1B4_5495 0.10 +2.8
243,296 + Pf1N1B4_5495 0.10 +0.4
243,297 - Pf1N1B4_5495 0.11 +0.4
243,297 - Pf1N1B4_5495 0.11 -0.5
243,297 - Pf1N1B4_5495 0.11 +0.0
243,351 + Pf1N1B4_5495 0.20 -0.6
243,351 + Pf1N1B4_5495 0.20 +0.8
243,351 + Pf1N1B4_5495 0.20 -0.2
243,351 + Pf1N1B4_5495 0.20 +1.0
243,352 - Pf1N1B4_5495 0.20 -0.1
243,352 - Pf1N1B4_5495 0.20 +0.4
243,360 + Pf1N1B4_5495 0.21 +0.8
243,361 - Pf1N1B4_5495 0.22 -0.4
243,369 + +0.4
243,370 - Pf1N1B4_5495 0.23 -0.4
243,475 - Pf1N1B4_5495 0.41 +1.5
243,583 + Pf1N1B4_5495 0.60 -0.8
243,584 - Pf1N1B4_5495 0.60 -1.0
243,584 - Pf1N1B4_5495 0.60 +0.5
243,719 - Pf1N1B4_5495 0.83 +1.0
243,790 + +0.0
243,791 - +0.9
243,791 - -1.6
243,834 + +0.2
243,834 + +1.6
243,835 - -2.0
243,835 - +1.4
243,922 + Pf1N1B4_5496 0.17 +0.8
243,922 + Pf1N1B4_5496 0.17 +0.8
243,922 + Pf1N1B4_5496 0.17 -0.6
243,923 - Pf1N1B4_5496 0.18 +1.2
243,923 - Pf1N1B4_5496 0.18 +0.0
243,923 - Pf1N1B4_5496 0.18 +2.0
244,000 + Pf1N1B4_5496 0.52 -1.4
244,001 - Pf1N1B4_5496 0.52 +0.6
244,106 - -1.9
244,129 - -0.6
244,129 - +0.6
244,154 + +0.9
244,155 - -0.6
244,155 - -0.6
244,155 - -1.3
244,183 - -0.6
244,183 - +0.4
244,183 - +0.8
244,183 - +0.5
244,183 - +0.6
244,183 - -2.0
244,300 + -0.4
244,431 - +0.7
244,431 - -1.0
244,445 - -1.2
244,571 - -0.6
244,571 - +0.3
244,571 - +0.0
244,571 - +2.6
244,888 + +0.0
244,888 + +0.0
244,888 + -0.3
244,945 + +1.6
244,970 + -1.3
244,971 - +0.2

Or see this region's nucleotide sequence