Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4758 and Pf1N1B4_4759 are separated by 12 nucleotides Pf1N1B4_4759 and Pf1N1B4_4760 are separated by 391 nucleotides Pf1N1B4_4760 and Pf1N1B4_4761 overlap by 4 nucleotides
Pf1N1B4_4758 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 5,256,175 to 5,257,188
_4758
Pf1N1B4_4759 - Proteinase inhibitor I11, ecotin precursor, at 5,257,201 to 5,257,683
_4759
Pf1N1B4_4760 - FIG00962118: hypothetical protein, at 5,258,075 to 5,258,344
_4760
Pf1N1B4_4761 - hypothetical protein, at 5,258,341 to 5,258,739
_4761
Position (kb) 5257
5258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5256.214 kb on + strand at 5256.215 kb on - strand at 5256.215 kb on - strand at 5256.368 kb on - strand, within Pf1N1B4_4758 at 5256.521 kb on + strand, within Pf1N1B4_4758 at 5256.522 kb on - strand, within Pf1N1B4_4758 at 5256.590 kb on - strand, within Pf1N1B4_4758 at 5256.776 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.277 kb on + strand, within Pf1N1B4_4759 at 5257.304 kb on + strand, within Pf1N1B4_4759 at 5257.305 kb on - strand, within Pf1N1B4_4759 at 5257.645 kb on + strand at 5257.901 kb on + strand at 5258.097 kb on + strand at 5258.180 kb on + strand, within Pf1N1B4_4760 at 5258.226 kb on + strand at 5258.503 kb on - strand, within Pf1N1B4_4761 at 5258.503 kb on - strand, within Pf1N1B4_4761 at 5258.558 kb on + strand, within Pf1N1B4_4761
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,256,214 + -0.6 5,256,215 - +0.4 5,256,215 - +0.2 5,256,368 - Pf1N1B4_4758 0.19 +0.4 5,256,521 + Pf1N1B4_4758 0.34 +0.3 5,256,522 - Pf1N1B4_4758 0.34 +0.4 5,256,590 - Pf1N1B4_4758 0.41 -0.6 5,256,776 - Pf1N1B4_4758 0.59 +0.2 5,257,067 - Pf1N1B4_4758 0.88 -0.2 5,257,067 - Pf1N1B4_4758 0.88 +0.4 5,257,067 - Pf1N1B4_4758 0.88 +1.8 5,257,277 + Pf1N1B4_4759 0.16 +0.2 5,257,304 + Pf1N1B4_4759 0.21 +0.4 5,257,305 - Pf1N1B4_4759 0.22 +0.9 5,257,645 + +1.4 5,257,901 + -2.4 5,258,097 + +0.1 5,258,180 + Pf1N1B4_4760 0.39 -0.6 5,258,226 + -0.0 5,258,503 - Pf1N1B4_4761 0.41 -0.5 5,258,503 - Pf1N1B4_4761 0.41 -0.6 5,258,558 + Pf1N1B4_4761 0.54 -1.4
Or see this region's nucleotide sequence