Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4646 and Pf1N1B4_4647 are separated by 205 nucleotides Pf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides Pf1N1B4_4648 and Pf1N1B4_4649 are separated by 428 nucleotides
Pf1N1B4_4646 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,125,168 to 5,126,601
_4646
Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247
_4647
Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453
_4648
Pf1N1B4_4649 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 5,128,882 to 5,129,391
_4649
Position (kb)
5127
5128
5129 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5126.562 kb on + strand at 5126.769 kb on + strand at 5126.785 kb on - strand at 5126.826 kb on - strand at 5127.246 kb on - strand at 5127.550 kb on - strand at 5127.914 kb on - strand, within Pf1N1B4_4648 at 5128.046 kb on + strand, within Pf1N1B4_4648 at 5128.220 kb on + strand, within Pf1N1B4_4648 at 5128.220 kb on + strand, within Pf1N1B4_4648 at 5128.277 kb on + strand, within Pf1N1B4_4648 at 5128.278 kb on - strand, within Pf1N1B4_4648 at 5128.278 kb on - strand, within Pf1N1B4_4648 at 5128.459 kb on - strand at 5128.462 kb on + strand at 5128.463 kb on - strand at 5128.463 kb on - strand at 5128.842 kb on - strand at 5128.955 kb on - strand at 5128.985 kb on + strand, within Pf1N1B4_4649 at 5129.330 kb on - strand, within Pf1N1B4_4649
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,126,562 + +0.8 5,126,769 + +0.4 5,126,785 - +0.7 5,126,826 - -1.6 5,127,246 - +0.4 5,127,550 - +0.3 5,127,914 - Pf1N1B4_4648 0.45 +2.0 5,128,046 + Pf1N1B4_4648 0.58 +0.9 5,128,220 + Pf1N1B4_4648 0.76 +0.4 5,128,220 + Pf1N1B4_4648 0.76 +0.4 5,128,277 + Pf1N1B4_4648 0.82 +0.4 5,128,278 - Pf1N1B4_4648 0.82 +0.8 5,128,278 - Pf1N1B4_4648 0.82 -1.2 5,128,459 - +2.8 5,128,462 + +1.4 5,128,463 - -0.7 5,128,463 - +0.2 5,128,842 - +1.0 5,128,955 - -0.2 5,128,985 + Pf1N1B4_4649 0.20 +0.0 5,129,330 - Pf1N1B4_4649 0.88 -0.6
Or see this region's nucleotide sequence