Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4395 and Pf1N1B4_4396 are separated by 126 nucleotides Pf1N1B4_4396 and Pf1N1B4_4397 are separated by 18 nucleotides Pf1N1B4_4397 and Pf1N1B4_4398 are separated by 9 nucleotides Pf1N1B4_4398 and Pf1N1B4_4399 are separated by 12 nucleotides
Pf1N1B4_4395 - Transcriptional regulator RpiR in protein degradation cluster, at 4,854,888 to 4,855,796
_4395
Pf1N1B4_4396 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,855,923 to 4,856,687
_4396
Pf1N1B4_4397 - Succinylglutamate desuccinylase/aspartoacylase, at 4,856,706 to 4,857,818
_4397
Pf1N1B4_4398 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 4,857,828 to 4,858,526
_4398
Pf1N1B4_4399 - Arginine/ornithine ABC transporter, permease protein AotQ, at 4,858,539 to 4,859,231
_4399
Position (kb) 4856
4857
4858 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.558 kb on + strand at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.658 kb on - strand at 4856.683 kb on + strand at 4856.693 kb on + strand at 4856.804 kb on - strand at 4856.947 kb on + strand at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand at 4857.830 kb on - strand at 4857.850 kb on + strand at 4857.913 kb on + strand, within Pf1N1B4_4398 at 4857.913 kb on + strand, within Pf1N1B4_4398 at 4857.948 kb on + strand, within Pf1N1B4_4398 at 4857.952 kb on + strand at 4857.952 kb on + strand, within Pf1N1B4_4398 at 4857.953 kb on - strand, within Pf1N1B4_4398 at 4857.953 kb on - strand, within Pf1N1B4_4398 at 4858.055 kb on - strand, within Pf1N1B4_4398 at 4858.196 kb on - strand, within Pf1N1B4_4398 at 4858.252 kb on + strand at 4858.253 kb on - strand, within Pf1N1B4_4398 at 4858.275 kb on + strand, within Pf1N1B4_4398 at 4858.303 kb on + strand, within Pf1N1B4_4398 at 4858.304 kb on - strand at 4858.348 kb on + strand, within Pf1N1B4_4398 at 4858.348 kb on + strand, within Pf1N1B4_4398 at 4858.352 kb on + strand, within Pf1N1B4_4398 at 4858.354 kb on + strand, within Pf1N1B4_4398 at 4858.354 kb on + strand at 4858.354 kb on + strand, within Pf1N1B4_4398 at 4858.355 kb on - strand, within Pf1N1B4_4398 at 4858.483 kb on + strand at 4858.571 kb on - strand at 4858.625 kb on - strand, within Pf1N1B4_4399
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,856,240 + Pf1N1B4_4396 0.41 +1.1 4,856,240 + Pf1N1B4_4396 0.41 -0.0 4,856,241 - Pf1N1B4_4396 0.42 -0.7 4,856,241 - Pf1N1B4_4396 0.42 +0.6 4,856,241 - Pf1N1B4_4396 0.42 -1.4 4,856,241 - Pf1N1B4_4396 0.42 -0.2 4,856,558 + -0.8 4,856,558 + Pf1N1B4_4396 0.83 +0.2 4,856,558 + Pf1N1B4_4396 0.83 -0.8 4,856,558 + Pf1N1B4_4396 0.83 +1.1 4,856,658 - +0.3 4,856,683 + -1.1 4,856,693 + -1.0 4,856,804 - +2.1 4,856,947 + +1.6 4,857,286 + Pf1N1B4_4397 0.52 +0.6 4,857,286 + Pf1N1B4_4397 0.52 -0.1 4,857,286 + Pf1N1B4_4397 0.52 -0.4 4,857,286 + Pf1N1B4_4397 0.52 +1.0 4,857,286 + Pf1N1B4_4397 0.52 -1.0 4,857,286 + +1.1 4,857,287 - Pf1N1B4_4397 0.52 +1.1 4,857,287 - Pf1N1B4_4397 0.52 +1.2 4,857,287 - -0.8 4,857,830 - -2.0 4,857,850 + -1.6 4,857,913 + Pf1N1B4_4398 0.12 -0.0 4,857,913 + Pf1N1B4_4398 0.12 +2.6 4,857,948 + Pf1N1B4_4398 0.17 +0.2 4,857,952 + +1.6 4,857,952 + Pf1N1B4_4398 0.18 -0.9 4,857,953 - Pf1N1B4_4398 0.18 -0.9 4,857,953 - Pf1N1B4_4398 0.18 -0.0 4,858,055 - Pf1N1B4_4398 0.32 -0.0 4,858,196 - Pf1N1B4_4398 0.53 +0.3 4,858,252 + -0.8 4,858,253 - Pf1N1B4_4398 0.61 -0.0 4,858,275 + Pf1N1B4_4398 0.64 +0.8 4,858,303 + Pf1N1B4_4398 0.68 -0.6 4,858,304 - +0.6 4,858,348 + Pf1N1B4_4398 0.74 +0.1 4,858,348 + Pf1N1B4_4398 0.74 -1.0 4,858,352 + Pf1N1B4_4398 0.75 +0.3 4,858,354 + Pf1N1B4_4398 0.75 -1.0 4,858,354 + -1.0 4,858,354 + Pf1N1B4_4398 0.75 +0.1 4,858,355 - Pf1N1B4_4398 0.75 -0.2 4,858,483 + +0.6 4,858,571 - -2.0 4,858,625 - Pf1N1B4_4399 0.12 -0.4
Or see this region's nucleotide sequence