Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3964 and Pf1N1B4_3965 are separated by 231 nucleotides Pf1N1B4_3965 and Pf1N1B4_3966 are separated by 131 nucleotides
Pf1N1B4_3964 - VgrG protein, at 4,404,012 to 4,405,436
_3964
Pf1N1B4_3965 - FIG033889: YebC paralog in Betaproteobacteria, at 4,405,668 to 4,406,372
_3965
Pf1N1B4_3966 - serine/threonine protein kinase, at 4,406,504 to 4,407,805
_3966
Position (kb)
4405
4406
4407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4404.907 kb on - strand, within Pf1N1B4_3964 at 4404.907 kb on - strand, within Pf1N1B4_3964 at 4404.938 kb on - strand at 4404.994 kb on + strand, within Pf1N1B4_3964 at 4404.994 kb on + strand, within Pf1N1B4_3964 at 4404.995 kb on - strand, within Pf1N1B4_3964 at 4405.178 kb on - strand, within Pf1N1B4_3964 at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.632 kb on + strand at 4405.633 kb on - strand at 4405.633 kb on - strand at 4405.914 kb on + strand, within Pf1N1B4_3965 at 4405.914 kb on + strand, within Pf1N1B4_3965 at 4405.914 kb on + strand at 4406.348 kb on + strand at 4406.349 kb on - strand at 4406.370 kb on + strand at 4406.787 kb on + strand, within Pf1N1B4_3966 at 4406.787 kb on + strand, within Pf1N1B4_3966 at 4407.102 kb on + strand, within Pf1N1B4_3966 at 4407.267 kb on + strand, within Pf1N1B4_3966 at 4407.268 kb on - strand, within Pf1N1B4_3966 at 4407.268 kb on - strand, within Pf1N1B4_3966
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,404,907 - Pf1N1B4_3964 0.63 +0.5 4,404,907 - Pf1N1B4_3964 0.63 -1.7 4,404,938 - -1.3 4,404,994 + Pf1N1B4_3964 0.69 +0.1 4,404,994 + Pf1N1B4_3964 0.69 +0.1 4,404,995 - Pf1N1B4_3964 0.69 -0.7 4,405,178 - Pf1N1B4_3964 0.82 -0.4 4,405,632 + -1.3 4,405,632 + +2.3 4,405,632 + +0.1 4,405,632 + +0.0 4,405,632 + -0.6 4,405,632 + +0.4 4,405,632 + -0.1 4,405,633 - +0.1 4,405,633 - -1.1 4,405,914 + Pf1N1B4_3965 0.35 +1.1 4,405,914 + Pf1N1B4_3965 0.35 -0.2 4,405,914 + +0.7 4,406,348 + +0.4 4,406,349 - +0.5 4,406,370 + +0.4 4,406,787 + Pf1N1B4_3966 0.22 -1.1 4,406,787 + Pf1N1B4_3966 0.22 +0.2 4,407,102 + Pf1N1B4_3966 0.46 -2.7 4,407,267 + Pf1N1B4_3966 0.59 +1.7 4,407,268 - Pf1N1B4_3966 0.59 +2.0 4,407,268 - Pf1N1B4_3966 0.59 -1.7
Or see this region's nucleotide sequence