Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3904 and Pf1N1B4_3905 are separated by 98 nucleotides Pf1N1B4_3905 and Pf1N1B4_3906 are separated by 114 nucleotides
Pf1N1B4_3904 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,335,300 to 4,336,451
_3904
Pf1N1B4_3905 - FIG00953423: hypothetical protein, at 4,336,550 to 4,336,786
_3905
Pf1N1B4_3906 - DNA topoisomerase I (EC 5.99.1.2), at 4,336,901 to 4,339,528
_3906
Position (kb)
4336
4337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4336.519 kb on - strand at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.649 kb on + strand, within Pf1N1B4_3905 at 4336.650 kb on - strand, within Pf1N1B4_3905 at 4336.650 kb on - strand at 4336.650 kb on - strand, within Pf1N1B4_3905 at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.839 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,336,519 - -0.4 4,336,581 - Pf1N1B4_3905 0.13 +0.0 4,336,581 - Pf1N1B4_3905 0.13 +1.8 4,336,581 - Pf1N1B4_3905 0.13 -0.4 4,336,581 - Pf1N1B4_3905 0.13 -0.2 4,336,581 - Pf1N1B4_3905 0.13 +0.8 4,336,603 - Pf1N1B4_3905 0.22 +0.8 4,336,603 - Pf1N1B4_3905 0.22 +1.3 4,336,603 - Pf1N1B4_3905 0.22 -0.8 4,336,649 + Pf1N1B4_3905 0.42 +1.8 4,336,650 - Pf1N1B4_3905 0.42 +0.2 4,336,650 - +0.8 4,336,650 - Pf1N1B4_3905 0.42 +1.0 4,336,835 + -0.1 4,336,835 + -1.0 4,336,835 + -1.8 4,336,835 + +0.8 4,336,837 + -0.8 4,336,837 + +0.5 4,336,837 + +1.4 4,336,837 + +0.1 4,336,837 + -0.8 4,336,837 + +1.3 4,336,837 + -2.1 4,336,839 + -1.2 4,336,877 + +0.6 4,336,877 + -0.7 4,336,877 + -2.1 4,336,877 + +0.5
Or see this region's nucleotide sequence