Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_137 and Pf1N1B4_138 are separated by 269 nucleotides Pf1N1B4_138 and Pf1N1B4_139 overlap by 4 nucleotides
Pf1N1B4_137 - Pyoverdine biosynthesis related protein PvdP, at 152,644 to 154,269
_137
Pf1N1B4_138 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 154,539 to 155,915
_138
Pf1N1B4_139 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 155,912 to 157,198
_139
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.894 kb on - strand, within Pf1N1B4_137 at 153.983 kb on + strand, within Pf1N1B4_137 at 154.200 kb on - strand at 154.311 kb on + strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.322 kb on + strand at 154.323 kb on - strand at 154.338 kb on - strand at 154.351 kb on + strand at 154.352 kb on - strand at 154.428 kb on + strand at 154.575 kb on + strand at 154.576 kb on - strand at 154.576 kb on - strand at 155.611 kb on - strand at 155.670 kb on + strand, within Pf1N1B4_138 at 155.671 kb on - strand, within Pf1N1B4_138 at 156.071 kb on + strand, within Pf1N1B4_139 at 156.072 kb on - strand, within Pf1N1B4_139 at 156.072 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.617 kb on + strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 153,849 - Pf1N1B4_137 0.74 -0.5 153,849 - Pf1N1B4_137 0.74 +0.2 153,849 - Pf1N1B4_137 0.74 -0.4 153,894 - Pf1N1B4_137 0.77 +2.4 153,983 + Pf1N1B4_137 0.82 +1.2 154,200 - +0.0 154,311 + -0.0 154,312 - -0.4 154,312 - -0.5 154,312 - -0.8 154,322 + -1.4 154,323 - +1.8 154,338 - +0.8 154,351 + -1.2 154,352 - -1.8 154,428 + +1.5 154,575 + -0.2 154,576 - -0.2 154,576 - +0.2 155,611 - +0.8 155,670 + Pf1N1B4_138 0.82 +1.2 155,671 - Pf1N1B4_138 0.82 -0.2 156,071 + Pf1N1B4_139 0.12 -0.2 156,072 - Pf1N1B4_139 0.12 +0.3 156,072 - Pf1N1B4_139 0.12 -0.1 156,360 - Pf1N1B4_139 0.35 -1.7 156,360 - Pf1N1B4_139 0.35 -0.0 156,360 - Pf1N1B4_139 0.35 -1.4 156,617 + Pf1N1B4_139 0.55 +0.2 156,618 - Pf1N1B4_139 0.55 -0.2 156,618 - Pf1N1B4_139 0.55 +0.8
Or see this region's nucleotide sequence