Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00285

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00280 and CA264_00285 are separated by 155 nucleotidesCA264_00285 and CA264_00290 are separated by 190 nucleotides CA264_00280: CA264_00280 - DegT/DnrJ/EryC1/StrS aminotransferase, at 66,571 to 67,683 _00280 CA264_00285: CA264_00285 - glycosyl transferase, at 67,839 to 68,786 _00285 CA264_00290: CA264_00290 - acyl-ACP desaturase, at 68,977 to 69,957 _00290 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1at 66.895 kb on + strand, within CA264_00280at 66.895 kb on + strand, within CA264_00280at 66.896 kb on - strand, within CA264_00280at 66.901 kb on + strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 67.145 kb on + strand, within CA264_00280at 67.166 kb on + strand, within CA264_00280at 67.214 kb on - strand, within CA264_00280at 67.381 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.425 kb on + strand, within CA264_00280at 67.431 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.504 kb on + strand, within CA264_00280at 67.537 kb on - strand, within CA264_00280at 67.550 kb on - strand, within CA264_00280at 67.552 kb on - strand, within CA264_00280at 67.649 kb on + strandat 67.650 kb on - strandat 67.659 kb on - strandat 67.778 kb on + strandat 67.778 kb on + strandat 67.779 kb on - strandat 67.879 kb on - strandat 67.932 kb on + strandat 67.967 kb on + strand, within CA264_00285at 67.967 kb on + strand, within CA264_00285at 67.968 kb on - strand, within CA264_00285at 68.001 kb on + strand, within CA264_00285at 68.001 kb on + strand, within CA264_00285at 68.031 kb on - strand, within CA264_00285at 68.070 kb on - strand, within CA264_00285at 68.199 kb on + strand, within CA264_00285at 68.241 kb on + strand, within CA264_00285at 68.242 kb on - strand, within CA264_00285at 68.259 kb on + strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.261 kb on + strand, within CA264_00285at 68.262 kb on - strand, within CA264_00285at 68.436 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.561 kb on - strand, within CA264_00285at 68.600 kb on - strand, within CA264_00285at 68.622 kb on + strand, within CA264_00285at 68.622 kb on + strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285at 68.696 kb on + strandat 68.697 kb on - strandat 68.697 kb on - strandat 68.708 kb on + strandat 68.720 kb on - strandat 68.763 kb on + strandat 68.764 kb on - strandat 68.835 kb on + strandat 68.836 kb on - strandat 68.840 kb on + strandat 68.840 kb on + strandat 68.841 kb on - strandat 68.841 kb on - strandat 68.841 kb on - strandat 68.841 kb on - strandat 68.841 kb on - strandat 68.842 kb on + strandat 68.843 kb on - strandat 68.844 kb on + strandat 68.845 kb on - strandat 68.886 kb on + strandat 68.886 kb on + strandat 68.886 kb on + strandat 68.887 kb on - strandat 68.887 kb on - strandat 68.942 kb on + strandat 68.948 kb on + strandat 68.948 kb on + strandat 68.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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66,895 + CA264_00280 0.29 -1.1
66,895 + CA264_00280 0.29 -0.9
66,896 - CA264_00280 0.29 -0.6
66,901 + CA264_00280 0.30 -1.6
66,902 - CA264_00280 0.30 -1.1
66,902 - CA264_00280 0.30 +0.3
67,145 + CA264_00280 0.52 -0.5
67,166 + CA264_00280 0.53 +0.5
67,214 - CA264_00280 0.58 -0.9
67,381 + CA264_00280 0.73 -1.4
67,420 + CA264_00280 0.76 -2.0
67,420 + CA264_00280 0.76 -0.1
67,420 + CA264_00280 0.76 -0.3
67,421 - CA264_00280 0.76 -1.4
67,421 - CA264_00280 0.76 -0.7
67,421 - CA264_00280 0.76 -0.5
67,421 - CA264_00280 0.76 +0.2
67,425 + CA264_00280 0.77 -0.7
67,431 + CA264_00280 0.77 -0.4
67,466 + CA264_00280 0.80 +0.1
67,466 + CA264_00280 0.80 +0.1
67,466 + CA264_00280 0.80 +0.1
67,467 - CA264_00280 0.81 +0.2
67,467 - CA264_00280 0.81 -0.4
67,467 - CA264_00280 0.81 -1.1
67,469 - CA264_00280 0.81 -1.1
67,469 - CA264_00280 0.81 +0.5
67,504 + CA264_00280 0.84 -0.6
67,537 - CA264_00280 0.87 -0.3
67,550 - CA264_00280 0.88 +0.2
67,552 - CA264_00280 0.88 -1.1
67,649 + -0.9
67,650 - -1.2
67,659 - +0.3
67,778 + -0.9
67,778 + +0.2
67,779 - +1.0
67,879 - -0.7
67,932 + -0.8
67,967 + CA264_00285 0.14 -0.7
67,967 + CA264_00285 0.14 -0.8
67,968 - CA264_00285 0.14 -1.4
68,001 + CA264_00285 0.17 -1.1
68,001 + CA264_00285 0.17 -0.1
68,031 - CA264_00285 0.20 -0.6
68,070 - CA264_00285 0.24 -0.9
68,199 + CA264_00285 0.38 -0.1
68,241 + CA264_00285 0.42 -1.1
68,242 - CA264_00285 0.43 +1.4
68,259 + CA264_00285 0.44 -0.8
68,260 - CA264_00285 0.44 -0.2
68,260 - CA264_00285 0.44 -0.3
68,260 - CA264_00285 0.44 -0.6
68,261 + CA264_00285 0.45 +0.1
68,262 - CA264_00285 0.45 -1.2
68,436 + CA264_00285 0.63 -0.6
68,560 + CA264_00285 0.76 -0.6
68,560 + CA264_00285 0.76 -1.3
68,560 + CA264_00285 0.76 +0.7
68,561 - CA264_00285 0.76 -1.8
68,600 - CA264_00285 0.80 -1.5
68,622 + CA264_00285 0.83 +0.3
68,622 + CA264_00285 0.83 -0.2
68,623 - CA264_00285 0.83 +0.2
68,623 - CA264_00285 0.83 -1.5
68,623 - CA264_00285 0.83 -0.3
68,696 + -0.4
68,697 - -1.1
68,697 - -0.3
68,708 + -0.3
68,720 - -0.3
68,763 + +1.1
68,764 - +1.1
68,835 + -0.6
68,836 - +0.4
68,840 + +0.2
68,840 + -1.4
68,841 - -0.9
68,841 - -0.1
68,841 - +0.0
68,841 - -0.7
68,841 - -0.6
68,842 + +1.2
68,843 - -1.1
68,844 + -0.1
68,845 - -0.1
68,886 + -0.3
68,886 + -0.0
68,886 + -0.0
68,887 - +0.4
68,887 - -0.9
68,942 + -1.1
68,948 + -0.5
68,948 + -0.1
68,949 - -0.5

Or see this region's nucleotide sequence