Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1028

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
1,041,404	-		Synpcc7942_1026	0.82	+0.9
1,041,415	-		Synpcc7942_1026	0.82	-1.7
1,041,425	-		Synpcc7942_1026	0.83	+1.3
1,041,433	+		Synpcc7942_1026	0.83	-1.7
1,041,434	+		Synpcc7942_1026	0.83	-1.1
1,041,438	+		Synpcc7942_1026	0.84	+1.1
1,041,441	-		Synpcc7942_1026	0.84	-1.7
1,041,441	-		Synpcc7942_1026	0.84	-0.5
1,041,445	+		Synpcc7942_1026	0.84	+1.0
1,041,448	-		Synpcc7942_1026	0.84	-0.4
1,041,458	-		Synpcc7942_1026	0.85	-0.3
1,041,459	+		Synpcc7942_1026	0.85	+1.6
1,041,472	+		Synpcc7942_1026	0.86	+0.8
1,041,472	-		Synpcc7942_1026	0.86	-0.7
1,041,472	-		Synpcc7942_1026	0.86	-1.1
1,041,503	+		Synpcc7942_1026	0.87	-0.7
1,041,510	+		Synpcc7942_1026	0.88	+0.9
1,041,511	-		Synpcc7942_1026	0.88	-1.7
1,041,511	-		Synpcc7942_1026	0.88	+0.3
1,041,511	-		Synpcc7942_1026	0.88	-1.4
1,041,511	-		Synpcc7942_1026	0.88	-1.1
1,041,511	-		Synpcc7942_1026	0.88	-1.3
1,041,546	-		Synpcc7942_1026	0.90	-3.3
1,041,554	-				-0.7
1,041,564	-				-0.9
1,041,580	+				-0.4
1,041,588	-				+2.1
1,041,588	-				-0.7
1,041,593	+				-0.7
1,041,610	+				+0.4
1,041,637	+				+0.2
1,041,637	+				+1.9
1,041,638	+				-0.4
1,041,645	-				+2.2
1,041,645	-				-2.7
1,041,646	+				+0.9
1,041,647	+				+1.4
1,041,647	+				-1.3
1,041,681	-				+0.3
1,041,682	+				+1.3
1,041,714	-				+1.6
1,041,726	-				-1.0
1,041,726	-				+0.3
1,041,740	-				+0.5
1,041,746	+				+0.5
1,041,756	-				-0.4
1,041,778	+				+0.2
1,041,778	+				+0.6
1,041,786	-				+0.5
1,041,788	+				+1.5
1,041,788	+				-1.0
1,041,788	+				+1.5
1,041,788	+				+1.1
1,041,789	+				-0.5
1,041,790	+				-0.4
1,041,790	+				-0.5
1,041,790	+				+0.0
1,041,792	-				+0.6
1,041,796	-				+1.1
1,041,796	-				+1.1
1,041,812	+				+1.7
1,041,812	+				-0.5
1,041,815	+				+0.6
1,041,820	-				+1.6
1,041,820	-				+0.3
1,041,820	-				+1.7
1,041,828	-				+0.2
1,041,841	-		Synpcc7942_1027	0.13	+1.0
1,041,854	+		Synpcc7942_1027	0.17	+0.2
1,041,860	+		Synpcc7942_1027	0.19	+0.3
1,041,860	+		Synpcc7942_1027	0.19	+1.1
1,041,860	+		Synpcc7942_1027	0.19	+0.0
1,041,862	-		Synpcc7942_1027	0.20	+0.3
1,041,865	+		Synpcc7942_1027	0.21	+1.5
1,041,921	+		Synpcc7942_1027	0.38	+0.5
1,041,924	-		Synpcc7942_1027	0.39	-2.7
1,041,924	-		Synpcc7942_1027	0.39	+1.8
1,041,929	-		Synpcc7942_1027	0.41	-1.7
1,041,929	-		Synpcc7942_1027	0.41	+1.7
1,041,929	-		Synpcc7942_1027	0.41	-0.4
1,041,969	-		Synpcc7942_1027	0.54	+1.1
1,041,996	-		Synpcc7942_1027	0.62	-1.1
1,042,003	+		Synpcc7942_1027	0.64	+1.2
1,042,043	-		Synpcc7942_1027	0.77	-0.6
1,042,079	+		Synpcc7942_1027	0.89	-0.7
1,042,079	+		Synpcc7942_1027	0.89	+0.8
1,042,081	+		Synpcc7942_1027	0.89	+0.4
1,042,087	-				+2.3
1,042,170	+				+0.9
1,042,180	-				-0.7
1,042,181	+				+0.1
1,042,181	+				+0.1
1,042,189	-				+1.4
1,042,189	-				+1.8
1,042,206	+				+0.1
1,042,211	-				-0.1
1,042,221	-				-0.1
1,042,230	-				+2.5
1,042,230	-				+0.7
1,042,265	-				-1.7
1,042,296	-				+1.2
1,042,296	-				+1.9
1,042,318	+				-0.3
1,042,319	+				+1.2
1,042,319	+				+0.6
1,042,378	-				+1.2
1,042,381	+				+0.7
1,042,381	+				-0.4
1,042,381	+				-2.5
1,042,381	+				+0.7
1,042,381	+				-0.4
1,042,381	+				+2.1
1,042,389	-				-0.0
1,042,389	-				+2.0
1,042,389	-				+1.0
1,042,389	-				-1.7
1,042,389	-				+0.0
1,042,440	-				-0.3
1,042,440	-				+0.5
1,042,445	-				-0.1
1,042,550	+		Synpcc7942_1028	0.17	+0.6
1,042,552	-		Synpcc7942_1028	0.18	+1.0
1,042,559	-		Synpcc7942_1028	0.18	+0.2
1,042,562	+		Synpcc7942_1028	0.19	+1.9
1,042,657	+		Synpcc7942_1028	0.29	+0.5
1,042,684	+		Synpcc7942_1028	0.31	+1.4
1,042,696	-		Synpcc7942_1028	0.33	-2.7
1,042,698	+		Synpcc7942_1028	0.33	-1.7
1,042,706	-		Synpcc7942_1028	0.34	-0.7
1,042,723	+		Synpcc7942_1028	0.35	+1.3
1,042,731	-		Synpcc7942_1028	0.36	-1.0
1,042,823	-		Synpcc7942_1028	0.46	-0.1
1,042,835	-		Synpcc7942_1028	0.47	-0.5
1,042,888	+		Synpcc7942_1028	0.53	-0.1
1,042,894	-		Synpcc7942_1028	0.53	+1.3
1,042,935	+		Synpcc7942_1028	0.58	+1.1
1,042,935	+		Synpcc7942_1028	0.58	-0.5
1,042,943	-		Synpcc7942_1028	0.58	-2.7
1,042,973	+		Synpcc7942_1028	0.62	-0.4
1,042,973	+		Synpcc7942_1028	0.62	+1.8
1,042,993	-		Synpcc7942_1028	0.64	+1.4
1,043,008	-		Synpcc7942_1028	0.65	-0.7
1,043,027	-		Synpcc7942_1028	0.67	+0.2
1,043,031	+		Synpcc7942_1028	0.68	+0.6
1,043,039	-		Synpcc7942_1028	0.68	+1.1
1,043,039	-		Synpcc7942_1028	0.68	+0.6
1,043,054	+		Synpcc7942_1028	0.70	+1.2
1,043,067	+		Synpcc7942_1028	0.71	+0.4
1,043,067	+		Synpcc7942_1028	0.71	+1.1
1,043,075	-		Synpcc7942_1028	0.72	+1.5
1,043,075	-		Synpcc7942_1028	0.72	-0.7
1,043,075	-		Synpcc7942_1028	0.72	+1.8
1,043,075	-		Synpcc7942_1028	0.72	+0.9
1,043,075	-		Synpcc7942_1028	0.72	+0.2
1,043,075	-		Synpcc7942_1028	0.72	+0.6
1,043,075	-		Synpcc7942_1028	0.72	+1.3
1,043,075	-		Synpcc7942_1028	0.72	-0.7
1,043,082	+				-0.1
1,043,085	-		Synpcc7942_1028	0.73	-0.1
1,043,097	-		Synpcc7942_1028	0.75	+0.4
1,043,099	+		Synpcc7942_1028	0.75	+0.8
1,043,099	+		Synpcc7942_1028	0.75	+0.4
1,043,212	+		Synpcc7942_1028	0.87	+0.1
1,043,220	-		Synpcc7942_1028	0.87	-0.5
1,043,233	+		Synpcc7942_1028	0.89	+0.3
1,043,236	-		Synpcc7942_1028	0.89	+0.1
1,043,236	-		Synpcc7942_1028	0.89	+0.3
1,043,236	-		Synpcc7942_1028	0.89	-1.7
1,043,241	-		Synpcc7942_1028	0.90	+0.5
1,043,257	+				+0.3
1,043,260	-				+1.5
1,043,272	+				-1.7
1,043,280	-				+1.0
1,043,301	+				+1.6
1,043,351	-				+1.1
1,043,352	-				+0.9
1,043,421	+				+1.1
1,043,440	-				-0.5
1,043,499	+				-0.2
1,043,507	-				+1.0
1,043,547	+				-0.7
1,043,559	+				+0.8
1,043,559	+				-1.1
1,043,559	+				+1.0
1,043,559	+				+0.3
1,043,559	+				-1.7
1,043,567	-				+0.2
1,043,640	-				+0.8
1,043,645	+				-1.0
1,043,653	-				+2.0
1,043,653	-				+2.3
1,043,702	+				+1.5
1,043,710	-				+1.2
1,043,710	-				+3.4
1,043,710	-				+1.1
1,043,729	-				+1.1
1,043,748	+				-0.1
1,043,754	-				-1.7
1,043,769	+				-0.7
1,043,769	+				+1.1
1,043,779	+				+0.6
1,043,779	+				+1.3
1,043,779	+				-1.4
1,043,779	+				+1.1
1,043,779	+				-1.5
1,043,779	+				-1.3
1,043,787	-				-2.3
1,043,787	-				+0.4
1,043,800	+				-0.7
1,043,805	+				+0.8
1,043,808	-				+0.1
1,043,813	-				-2.7
1,043,823	-				+1.5