Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroA and Synpcc7942_0233 are separated by 343 nucleotides Synpcc7942_0233 and Synpcc7942_0234 are separated by 103 nucleotides Synpcc7942_0234 and Synpcc7942_0235 are separated by 11 nucleotides Synpcc7942_0235 and Synpcc7942_0236 are separated by 340 nucleotides
Synpcc7942_0232: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 227,939 to 229,285
aroA
Synpcc7942_0233: Synpcc7942_0233 - hypothetical protein, at 229,629 to 230,054
_0233
Synpcc7942_0234: Synpcc7942_0234 - hypothetical protein, at 230,158 to 231,150
_0234
Synpcc7942_0235: Synpcc7942_0235 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 231,162 to 231,677
_0235
Synpcc7942_0236: Synpcc7942_0236 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 232,018 to 232,557
_0236
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 229.320 kb on + strand at 229.400 kb on + strand at 229.463 kb on - strand at 229.564 kb on - strand at 229.684 kb on - strand, within Synpcc7942_0233 at 229.796 kb on + strand, within Synpcc7942_0233 at 229.949 kb on + strand, within Synpcc7942_0233 at 229.957 kb on - strand, within Synpcc7942_0233 at 229.991 kb on + strand, within Synpcc7942_0233 at 229.991 kb on + strand, within Synpcc7942_0233 at 229.996 kb on + strand, within Synpcc7942_0233 at 230.021 kb on - strand at 230.075 kb on + strand at 230.080 kb on + strand at 230.083 kb on - strand at 230.083 kb on - strand at 230.106 kb on - strand at 230.114 kb on + strand at 230.114 kb on + strand at 230.114 kb on + strand at 230.122 kb on + strand at 230.123 kb on - strand at 230.123 kb on - strand at 230.155 kb on + strand at 230.165 kb on + strand at 230.177 kb on + strand at 230.187 kb on - strand at 230.220 kb on + strand at 230.241 kb on + strand at 230.242 kb on + strand at 230.249 kb on + strand at 230.266 kb on + strand, within Synpcc7942_0234 at 230.267 kb on + strand, within Synpcc7942_0234 at 230.274 kb on - strand, within Synpcc7942_0234 at 230.274 kb on - strand, within Synpcc7942_0234 at 230.301 kb on - strand, within Synpcc7942_0234 at 230.321 kb on + strand, within Synpcc7942_0234 at 230.324 kb on - strand, within Synpcc7942_0234 at 230.333 kb on + strand at 230.333 kb on + strand, within Synpcc7942_0234 at 230.333 kb on + strand, within Synpcc7942_0234 at 230.333 kb on + strand, within Synpcc7942_0234 at 230.341 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.389 kb on - strand, within Synpcc7942_0234 at 230.458 kb on - strand, within Synpcc7942_0234 at 230.458 kb on - strand, within Synpcc7942_0234 at 230.459 kb on + strand, within Synpcc7942_0234 at 230.466 kb on - strand, within Synpcc7942_0234 at 230.467 kb on - strand, within Synpcc7942_0234 at 230.467 kb on - strand, within Synpcc7942_0234 at 230.467 kb on - strand, within Synpcc7942_0234 at 230.474 kb on + strand, within Synpcc7942_0234 at 230.476 kb on + strand, within Synpcc7942_0234 at 230.477 kb on - strand, within Synpcc7942_0234 at 230.478 kb on - strand, within Synpcc7942_0234 at 230.484 kb on + strand, within Synpcc7942_0234 at 230.494 kb on + strand, within Synpcc7942_0234 at 230.495 kb on + strand, within Synpcc7942_0234 at 230.495 kb on + strand, within Synpcc7942_0234 at 230.495 kb on + strand, within Synpcc7942_0234 at 230.497 kb on - strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.505 kb on + strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.513 kb on - strand, within Synpcc7942_0234 at 230.532 kb on - strand, within Synpcc7942_0234 at 230.574 kb on + strand, within Synpcc7942_0234 at 230.574 kb on + strand, within Synpcc7942_0234 at 230.582 kb on - strand, within Synpcc7942_0234 at 230.582 kb on - strand, within Synpcc7942_0234 at 230.582 kb on - strand, within Synpcc7942_0234 at 230.593 kb on - strand, within Synpcc7942_0234 at 230.614 kb on + strand, within Synpcc7942_0234 at 230.615 kb on + strand, within Synpcc7942_0234 at 230.622 kb on - strand, within Synpcc7942_0234 at 230.623 kb on - strand, within Synpcc7942_0234 at 230.652 kb on + strand, within Synpcc7942_0234 at 230.658 kb on + strand, within Synpcc7942_0234 at 230.658 kb on + strand, within Synpcc7942_0234 at 230.661 kb on - strand, within Synpcc7942_0234 at 230.666 kb on - strand, within Synpcc7942_0234 at 230.666 kb on - strand, within Synpcc7942_0234 at 230.667 kb on + strand, within Synpcc7942_0234 at 230.669 kb on + strand, within Synpcc7942_0234 at 230.669 kb on + strand, within Synpcc7942_0234 at 230.677 kb on - strand, within Synpcc7942_0234 at 230.691 kb on + strand, within Synpcc7942_0234 at 230.701 kb on + strand, within Synpcc7942_0234 at 230.716 kb on - strand, within Synpcc7942_0234 at 230.721 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.724 kb on + strand, within Synpcc7942_0234 at 230.796 kb on + strand, within Synpcc7942_0234 at 230.796 kb on + strand, within Synpcc7942_0234 at 230.799 kb on - strand, within Synpcc7942_0234 at 230.809 kb on - strand, within Synpcc7942_0234 at 230.809 kb on - strand, within Synpcc7942_0234 at 230.821 kb on - strand, within Synpcc7942_0234 at 230.835 kb on + strand, within Synpcc7942_0234 at 230.848 kb on - strand, within Synpcc7942_0234 at 230.854 kb on - strand, within Synpcc7942_0234 at 230.858 kb on + strand, within Synpcc7942_0234 at 230.860 kb on + strand, within Synpcc7942_0234 at 230.866 kb on - strand, within Synpcc7942_0234 at 230.866 kb on - strand, within Synpcc7942_0234 at 230.868 kb on - strand, within Synpcc7942_0234 at 230.879 kb on - strand, within Synpcc7942_0234 at 230.885 kb on + strand, within Synpcc7942_0234 at 230.885 kb on + strand, within Synpcc7942_0234 at 230.890 kb on - strand, within Synpcc7942_0234 at 230.893 kb on - strand, within Synpcc7942_0234 at 230.893 kb on - strand, within Synpcc7942_0234 at 230.893 kb on - strand, within Synpcc7942_0234 at 230.902 kb on + strand, within Synpcc7942_0234 at 230.925 kb on + strand, within Synpcc7942_0234 at 230.933 kb on - strand, within Synpcc7942_0234 at 230.936 kb on + strand, within Synpcc7942_0234 at 230.944 kb on + strand, within Synpcc7942_0234 at 230.959 kb on + strand, within Synpcc7942_0234 at 230.959 kb on + strand, within Synpcc7942_0234 at 230.959 kb on + strand, within Synpcc7942_0234 at 230.961 kb on - strand, within Synpcc7942_0234 at 230.967 kb on - strand, within Synpcc7942_0234 at 230.985 kb on + strand, within Synpcc7942_0234 at 230.985 kb on + strand, within Synpcc7942_0234 at 231.003 kb on + strand, within Synpcc7942_0234 at 231.011 kb on - strand, within Synpcc7942_0234 at 231.014 kb on + strand, within Synpcc7942_0234 at 231.014 kb on + strand, within Synpcc7942_0234 at 231.014 kb on + strand, within Synpcc7942_0234 at 231.059 kb on + strand at 231.083 kb on + strand at 231.088 kb on - strand at 231.127 kb on + strand at 231.130 kb on + strand at 231.130 kb on + strand at 231.130 kb on + strand at 231.138 kb on - strand at 231.138 kb on - strand at 231.170 kb on + strand at 231.203 kb on - strand at 231.205 kb on - strand at 231.205 kb on - strand at 231.218 kb on - strand, within Synpcc7942_0235 at 231.227 kb on - strand, within Synpcc7942_0235 at 231.233 kb on + strand, within Synpcc7942_0235 at 231.241 kb on - strand, within Synpcc7942_0235 at 231.246 kb on + strand, within Synpcc7942_0235 at 231.251 kb on - strand, within Synpcc7942_0235 at 231.256 kb on + strand, within Synpcc7942_0235 at 231.256 kb on + strand, within Synpcc7942_0235 at 231.256 kb on + strand, within Synpcc7942_0235 at 231.262 kb on + strand, within Synpcc7942_0235 at 231.287 kb on - strand, within Synpcc7942_0235 at 231.312 kb on - strand, within Synpcc7942_0235 at 231.322 kb on - strand, within Synpcc7942_0235 at 231.347 kb on + strand, within Synpcc7942_0235 at 231.359 kb on - strand, within Synpcc7942_0235 at 231.380 kb on - strand, within Synpcc7942_0235 at 231.384 kb on + strand, within Synpcc7942_0235 at 231.392 kb on - strand, within Synpcc7942_0235 at 231.476 kb on + strand, within Synpcc7942_0235 at 231.484 kb on - strand, within Synpcc7942_0235 at 231.484 kb on - strand, within Synpcc7942_0235 at 231.496 kb on - strand, within Synpcc7942_0235 at 231.514 kb on + strand, within Synpcc7942_0235 at 231.536 kb on + strand, within Synpcc7942_0235 at 231.566 kb on - strand, within Synpcc7942_0235 at 231.566 kb on - strand, within Synpcc7942_0235 at 231.570 kb on + strand, within Synpcc7942_0235 at 231.626 kb on - strand at 231.662 kb on - strand at 231.734 kb on + strand at 231.802 kb on + strand at 231.802 kb on + strand at 231.810 kb on - strand at 231.810 kb on - strand at 231.810 kb on - strand at 231.810 kb on - strand at 231.842 kb on - strand at 231.871 kb on + strand at 231.977 kb on + strand at 232.000 kb on + strand at 232.135 kb on + strand, within Synpcc7942_0236
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 229,320 + +0.9 229,400 + +1.7 229,463 - +1.4 229,564 - -1.8 229,684 - Synpcc7942_0233 0.13 +0.6 229,796 + Synpcc7942_0233 0.39 -0.2 229,949 + Synpcc7942_0233 0.75 -1.2 229,957 - Synpcc7942_0233 0.77 +0.1 229,991 + Synpcc7942_0233 0.85 -0.3 229,991 + Synpcc7942_0233 0.85 +0.7 229,996 + Synpcc7942_0233 0.86 +0.5 230,021 - +1.5 230,075 + +2.3 230,080 + +0.5 230,083 - +0.3 230,083 - -0.3 230,106 - -0.4 230,114 + -0.1 230,114 + +0.5 230,114 + -0.6 230,122 + -0.8 230,123 - -0.3 230,123 - +1.4 230,155 + -1.6 230,165 + +0.9 230,177 + -0.4 230,187 - -0.6 230,220 + +0.8 230,241 + +1.3 230,242 + -1.6 230,249 + -0.1 230,266 + Synpcc7942_0234 0.11 +0.9 230,267 + Synpcc7942_0234 0.11 +1.3 230,274 - Synpcc7942_0234 0.12 +0.4 230,274 - Synpcc7942_0234 0.12 +0.9 230,301 - Synpcc7942_0234 0.14 -0.0 230,321 + Synpcc7942_0234 0.16 -0.9 230,324 - Synpcc7942_0234 0.17 +0.9 230,333 + -1.6 230,333 + Synpcc7942_0234 0.18 +1.0 230,333 + Synpcc7942_0234 0.18 -0.1 230,333 + Synpcc7942_0234 0.18 +0.4 230,341 - Synpcc7942_0234 0.18 -0.5 230,389 - Synpcc7942_0234 0.23 +0.4 230,389 - Synpcc7942_0234 0.23 -0.6 230,389 - Synpcc7942_0234 0.23 +0.4 230,389 - Synpcc7942_0234 0.23 +0.9 230,389 - Synpcc7942_0234 0.23 +0.2 230,389 - Synpcc7942_0234 0.23 +1.4 230,389 - Synpcc7942_0234 0.23 +0.4 230,458 - Synpcc7942_0234 0.30 +1.4 230,458 - Synpcc7942_0234 0.30 +2.1 230,459 + Synpcc7942_0234 0.30 +0.7 230,466 - Synpcc7942_0234 0.31 +3.8 230,467 - Synpcc7942_0234 0.31 +1.2 230,467 - Synpcc7942_0234 0.31 +0.5 230,467 - Synpcc7942_0234 0.31 +1.4 230,474 + Synpcc7942_0234 0.32 +1.3 230,476 + Synpcc7942_0234 0.32 -1.6 230,477 - Synpcc7942_0234 0.32 -0.9 230,478 - Synpcc7942_0234 0.32 +0.0 230,484 + Synpcc7942_0234 0.33 +3.3 230,494 + Synpcc7942_0234 0.34 -1.6 230,495 + Synpcc7942_0234 0.34 +2.1 230,495 + Synpcc7942_0234 0.34 +0.3 230,495 + Synpcc7942_0234 0.34 +0.9 230,497 - Synpcc7942_0234 0.34 -1.3 230,505 + Synpcc7942_0234 0.35 +0.3 230,505 + Synpcc7942_0234 0.35 +1.8 230,505 + Synpcc7942_0234 0.35 -1.6 230,505 + Synpcc7942_0234 0.35 +0.6 230,505 + Synpcc7942_0234 0.35 +0.4 230,505 + Synpcc7942_0234 0.35 +0.5 230,505 + Synpcc7942_0234 0.35 -0.6 230,505 + Synpcc7942_0234 0.35 +0.7 230,505 + Synpcc7942_0234 0.35 -0.9 230,505 + Synpcc7942_0234 0.35 +2.1 230,505 + Synpcc7942_0234 0.35 +1.6 230,505 + Synpcc7942_0234 0.35 +2.7 230,505 + Synpcc7942_0234 0.35 +0.9 230,513 - Synpcc7942_0234 0.36 +2.4 230,513 - Synpcc7942_0234 0.36 -0.6 230,513 - Synpcc7942_0234 0.36 +2.5 230,513 - Synpcc7942_0234 0.36 -1.2 230,513 - Synpcc7942_0234 0.36 +0.9 230,513 - Synpcc7942_0234 0.36 -1.1 230,513 - Synpcc7942_0234 0.36 +3.0 230,513 - Synpcc7942_0234 0.36 -1.6 230,513 - Synpcc7942_0234 0.36 +1.2 230,513 - Synpcc7942_0234 0.36 +0.0 230,513 - Synpcc7942_0234 0.36 +0.5 230,532 - Synpcc7942_0234 0.38 -1.6 230,574 + Synpcc7942_0234 0.42 -0.1 230,574 + Synpcc7942_0234 0.42 +0.4 230,582 - Synpcc7942_0234 0.43 -0.2 230,582 - Synpcc7942_0234 0.43 +1.0 230,582 - Synpcc7942_0234 0.43 +0.4 230,593 - Synpcc7942_0234 0.44 -0.4 230,614 + Synpcc7942_0234 0.46 +1.4 230,615 + Synpcc7942_0234 0.46 +0.6 230,622 - Synpcc7942_0234 0.47 -1.2 230,623 - Synpcc7942_0234 0.47 -0.6 230,652 + Synpcc7942_0234 0.50 +1.4 230,658 + Synpcc7942_0234 0.50 -3.2 230,658 + Synpcc7942_0234 0.50 +0.5 230,661 - Synpcc7942_0234 0.51 +1.1 230,666 - Synpcc7942_0234 0.51 -0.2 230,666 - Synpcc7942_0234 0.51 +1.9 230,667 + Synpcc7942_0234 0.51 -0.6 230,669 + Synpcc7942_0234 0.51 -3.2 230,669 + Synpcc7942_0234 0.51 +3.1 230,677 - Synpcc7942_0234 0.52 -0.2 230,691 + Synpcc7942_0234 0.54 +2.0 230,701 + Synpcc7942_0234 0.55 -1.6 230,716 - Synpcc7942_0234 0.56 -0.1 230,721 + Synpcc7942_0234 0.57 +3.2 230,724 + Synpcc7942_0234 0.57 +1.2 230,724 + Synpcc7942_0234 0.57 +0.5 230,724 + Synpcc7942_0234 0.57 -1.6 230,724 + Synpcc7942_0234 0.57 +0.7 230,724 + Synpcc7942_0234 0.57 -0.3 230,724 + Synpcc7942_0234 0.57 +0.4 230,796 + Synpcc7942_0234 0.64 +0.1 230,796 + Synpcc7942_0234 0.64 +0.1 230,799 - Synpcc7942_0234 0.65 -1.2 230,809 - Synpcc7942_0234 0.66 +1.1 230,809 - Synpcc7942_0234 0.66 +0.8 230,821 - Synpcc7942_0234 0.67 +0.5 230,835 + Synpcc7942_0234 0.68 +0.0 230,848 - Synpcc7942_0234 0.69 +1.2 230,854 - Synpcc7942_0234 0.70 +2.6 230,858 + Synpcc7942_0234 0.70 -1.1 230,860 + Synpcc7942_0234 0.71 -0.1 230,866 - Synpcc7942_0234 0.71 -0.2 230,866 - Synpcc7942_0234 0.71 +1.2 230,868 - Synpcc7942_0234 0.72 -1.1 230,879 - Synpcc7942_0234 0.73 +0.7 230,885 + Synpcc7942_0234 0.73 +1.2 230,885 + Synpcc7942_0234 0.73 -0.9 230,890 - Synpcc7942_0234 0.74 +2.4 230,893 - Synpcc7942_0234 0.74 +2.0 230,893 - Synpcc7942_0234 0.74 -0.6 230,893 - Synpcc7942_0234 0.74 +1.5 230,902 + Synpcc7942_0234 0.75 +0.9 230,925 + Synpcc7942_0234 0.77 +1.4 230,933 - Synpcc7942_0234 0.78 +0.2 230,936 + Synpcc7942_0234 0.78 -0.1 230,944 + Synpcc7942_0234 0.79 +1.3 230,959 + Synpcc7942_0234 0.81 +2.0 230,959 + Synpcc7942_0234 0.81 -3.2 230,959 + Synpcc7942_0234 0.81 -0.2 230,961 - Synpcc7942_0234 0.81 -3.2 230,967 - Synpcc7942_0234 0.81 +1.5 230,985 + Synpcc7942_0234 0.83 +0.4 230,985 + Synpcc7942_0234 0.83 +0.7 231,003 + Synpcc7942_0234 0.85 -2.4 231,011 - Synpcc7942_0234 0.86 -0.6 231,014 + Synpcc7942_0234 0.86 +1.1 231,014 + Synpcc7942_0234 0.86 -1.6 231,014 + Synpcc7942_0234 0.86 +0.9 231,059 + +0.7 231,083 + +0.5 231,088 - +0.7 231,127 + +2.0 231,130 + +0.7 231,130 + -0.3 231,130 + +2.5 231,138 - -0.4 231,138 - +0.7 231,170 + +0.2 231,203 - +1.1 231,205 - +0.6 231,205 - +0.5 231,218 - Synpcc7942_0235 0.11 -0.6 231,227 - Synpcc7942_0235 0.13 -0.3 231,233 + Synpcc7942_0235 0.14 +0.2 231,241 - Synpcc7942_0235 0.15 -0.1 231,246 + Synpcc7942_0235 0.16 +1.3 231,251 - Synpcc7942_0235 0.17 -1.1 231,256 + Synpcc7942_0235 0.18 +1.4 231,256 + Synpcc7942_0235 0.18 +0.8 231,256 + Synpcc7942_0235 0.18 +1.1 231,262 + Synpcc7942_0235 0.19 +1.1 231,287 - Synpcc7942_0235 0.24 +0.4 231,312 - Synpcc7942_0235 0.29 +0.8 231,322 - Synpcc7942_0235 0.31 -0.2 231,347 + Synpcc7942_0235 0.36 -0.6 231,359 - Synpcc7942_0235 0.38 +1.7 231,380 - Synpcc7942_0235 0.42 +3.0 231,384 + Synpcc7942_0235 0.43 +0.8 231,392 - Synpcc7942_0235 0.45 -0.2 231,476 + Synpcc7942_0235 0.61 -0.1 231,484 - Synpcc7942_0235 0.62 +1.1 231,484 - Synpcc7942_0235 0.62 +0.3 231,496 - Synpcc7942_0235 0.65 -0.1 231,514 + Synpcc7942_0235 0.68 +1.4 231,536 + Synpcc7942_0235 0.72 +1.8 231,566 - Synpcc7942_0235 0.78 -2.1 231,566 - Synpcc7942_0235 0.78 +0.8 231,570 + Synpcc7942_0235 0.79 -1.6 231,626 - -0.1 231,662 - +3.2 231,734 + +1.2 231,802 + -0.2 231,802 + +0.8 231,810 - +1.7 231,810 - +0.2 231,810 - +1.0 231,810 - -0.2 231,842 - +1.1 231,871 + +0.9 231,977 + +1.7 232,000 + -1.7 232,135 + Synpcc7942_0236 0.22 +0.9
Or see this region's nucleotide sequence