Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31805

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31800 and RR42_RS31805 are separated by 47 nucleotidesRR42_RS31805 and RR42_RS31810 are separated by 341 nucleotidesRR42_RS31810 and RR42_RS31815 are separated by 18 nucleotides RR42_RS31800: RR42_RS31800 - Nitrate reductase (EC 1.7.99.4) (from data), at 2,511,585 to 2,514,377 _RS31800 RR42_RS31805: RR42_RS31805 - hypothetical protein, at 2,514,425 to 2,514,649 _RS31805 RR42_RS31810: RR42_RS31810 - hypothetical protein, at 2,514,991 to 2,515,545 _RS31810 RR42_RS31815: RR42_RS31815 - steroid delta-isomerase, at 2,515,564 to 2,515,953 _RS31815 Position (kb) 2514 2515Strain fitness (log2 ratio) -2 -1 0 1at 2513.677 kb on + strand, within RR42_RS31800at 2514.022 kb on - strand, within RR42_RS31800at 2514.066 kb on + strand, within RR42_RS31800at 2514.066 kb on + strand, within RR42_RS31800at 2514.067 kb on - strand, within RR42_RS31800at 2514.067 kb on - strand, within RR42_RS31800at 2514.355 kb on + strandat 2514.356 kb on - strandat 2514.427 kb on - strandat 2514.427 kb on - strandat 2514.558 kb on - strand, within RR42_RS31805at 2514.701 kb on - strandat 2514.805 kb on - strandat 2514.805 kb on - strandat 2514.805 kb on - strandat 2514.857 kb on - strandat 2514.857 kb on - strandat 2514.913 kb on + strandat 2514.914 kb on - strandat 2514.984 kb on - strandat 2514.992 kb on + strandat 2514.993 kb on - strandat 2515.072 kb on + strand, within RR42_RS31810at 2515.401 kb on - strand, within RR42_RS31810at 2515.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,513,677 + RR42_RS31800 0.75 -1.8
2,514,022 - RR42_RS31800 0.87 +0.5
2,514,066 + RR42_RS31800 0.89 -0.9
2,514,066 + RR42_RS31800 0.89 +0.2
2,514,067 - RR42_RS31800 0.89 -0.4
2,514,067 - RR42_RS31800 0.89 -0.3
2,514,355 + +0.2
2,514,356 - -0.2
2,514,427 - -1.5
2,514,427 - -2.6
2,514,558 - RR42_RS31805 0.59 -0.3
2,514,701 - +0.4
2,514,805 - +0.1
2,514,805 - -0.8
2,514,805 - +0.6
2,514,857 - -0.7
2,514,857 - +1.1
2,514,913 + +1.1
2,514,914 - -0.7
2,514,984 - +0.2
2,514,992 + -0.0
2,514,993 - +0.4
2,515,072 + RR42_RS31810 0.15 +0.6
2,515,401 - RR42_RS31810 0.74 +0.2
2,515,566 - -1.3

Or see this region's nucleotide sequence