Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3664 and Psyr_3665 are separated by 226 nucleotides Psyr_3665 and Psyr_3666 are separated by 408 nucleotides Psyr_3666 and Psyr_3667 are separated by 641 nucleotides
Psyr_3664: Psyr_3664 - DTW, at 4,350,591 to 4,351,190
_3664
Psyr_3665: Psyr_3665 - conserved hypothetical protein, at 4,351,417 to 4,351,719
_3665
Psyr_3666: Psyr_3666 - Protein of unknown function DUF195, at 4,352,128 to 4,353,606
_3666
Psyr_3667: Psyr_3667 - conserved hypothetical protein, at 4,354,248 to 4,354,553
_3667
Position (kb) 4352
4353
4354 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4351.286 kb on + strand at 4351.344 kb on - strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.458 kb on - strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.470 kb on - strand, within Psyr_3665 at 4351.659 kb on - strand, within Psyr_3665 at 4351.733 kb on + strand at 4351.872 kb on + strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.893 kb on + strand at 4351.894 kb on - strand at 4351.894 kb on - strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.929 kb on - strand at 4351.929 kb on - strand at 4351.948 kb on + strand at 4351.949 kb on - strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.067 kb on - strand at 4352.067 kb on - strand at 4352.067 kb on - strand at 4352.288 kb on + strand, within Psyr_3666 at 4352.289 kb on - strand, within Psyr_3666 at 4352.361 kb on - strand, within Psyr_3666 at 4352.600 kb on + strand, within Psyr_3666 at 4352.600 kb on + strand, within Psyr_3666 at 4352.601 kb on - strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.822 kb on + strand, within Psyr_3666 at 4353.014 kb on + strand, within Psyr_3666 at 4353.015 kb on - strand, within Psyr_3666 at 4353.581 kb on - strand at 4353.581 kb on - strand at 4353.628 kb on + strand at 4353.667 kb on - strand at 4353.737 kb on - strand at 4353.766 kb on - strand at 4353.769 kb on - strand at 4353.833 kb on + strand at 4353.924 kb on + strand at 4353.925 kb on - strand at 4353.938 kb on - strand at 4354.039 kb on + strand at 4354.039 kb on + strand at 4354.039 kb on + strand at 4354.039 kb on + strand at 4354.039 kb on + strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.076 kb on + strand at 4354.076 kb on + strand at 4354.139 kb on + strand at 4354.139 kb on + strand at 4354.140 kb on - strand at 4354.140 kb on - strand at 4354.140 kb on - strand at 4354.218 kb on + strand at 4354.219 kb on - strand at 4354.223 kb on + strand at 4354.223 kb on + strand at 4354.223 kb on + strand at 4354.224 kb on - strand at 4354.350 kb on + strand, within Psyr_3667 at 4354.415 kb on + strand, within Psyr_3667 at 4354.415 kb on + strand, within Psyr_3667 at 4354.473 kb on - strand, within Psyr_3667 at 4354.473 kb on - strand, within Psyr_3667 at 4354.523 kb on - strand at 4354.596 kb on - strand at 4354.596 kb on - strand at 4354.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,351,286 + +2.1 4,351,344 - +2.7 4,351,376 + +0.1 4,351,376 + +2.4 4,351,376 + -0.8 4,351,376 + -1.0 4,351,376 + +3.9 4,351,376 + +0.1 4,351,377 - -1.1 4,351,377 - +3.4 4,351,387 + -1.0 4,351,387 + -1.5 4,351,387 + +1.7 4,351,387 + -0.6 4,351,387 + -2.1 4,351,388 - +1.7 4,351,388 - -0.4 4,351,388 - +3.5 4,351,388 - -1.1 4,351,388 - -1.6 4,351,388 - -0.8 4,351,458 - Psyr_3665 0.14 -1.3 4,351,469 + Psyr_3665 0.17 +0.1 4,351,469 + Psyr_3665 0.17 -3.7 4,351,469 + Psyr_3665 0.17 +0.1 4,351,469 + Psyr_3665 0.17 -4.2 4,351,469 + Psyr_3665 0.17 +0.1 4,351,470 - Psyr_3665 0.17 -3.1 4,351,659 - Psyr_3665 0.80 -3.1 4,351,733 + -2.6 4,351,872 + +1.7 4,351,873 - -1.9 4,351,873 - +2.9 4,351,873 - +4.1 4,351,873 - +1.1 4,351,873 - -1.9 4,351,893 + -4.2 4,351,894 - -1.7 4,351,894 - +2.7 4,351,928 + -2.7 4,351,928 + -1.6 4,351,928 + +2.4 4,351,929 - +0.1 4,351,929 - -2.3 4,351,948 + -0.7 4,351,949 - -2.8 4,351,989 + +3.1 4,351,989 + -5.2 4,351,989 + +0.1 4,351,989 + +3.2 4,351,990 - +4.2 4,351,990 - +1.1 4,351,990 - -1.0 4,351,990 - +3.2 4,351,990 - +3.5 4,351,990 - +3.2 4,351,990 - -0.9 4,351,990 - +2.9 4,351,990 - -1.5 4,352,066 + -2.2 4,352,066 + -0.7 4,352,066 + +0.8 4,352,066 + +2.7 4,352,067 - -0.7 4,352,067 - -2.4 4,352,067 - +0.1 4,352,288 + Psyr_3666 0.11 -2.5 4,352,289 - Psyr_3666 0.11 -4.0 4,352,361 - Psyr_3666 0.16 -2.2 4,352,600 + Psyr_3666 0.32 +3.4 4,352,600 + Psyr_3666 0.32 -1.3 4,352,601 - Psyr_3666 0.32 -2.0 4,352,644 + Psyr_3666 0.35 -3.7 4,352,644 + Psyr_3666 0.35 -1.6 4,352,644 + Psyr_3666 0.35 +0.3 4,352,644 + Psyr_3666 0.35 -1.9 4,352,644 + Psyr_3666 0.35 +0.1 4,352,645 - Psyr_3666 0.35 +0.1 4,352,645 - Psyr_3666 0.35 -1.5 4,352,696 + Psyr_3666 0.38 +0.1 4,352,696 + Psyr_3666 0.38 +0.1 4,352,696 + Psyr_3666 0.38 +0.1 4,352,696 + Psyr_3666 0.38 -2.6 4,352,696 + Psyr_3666 0.38 -1.0 4,352,696 + Psyr_3666 0.38 +1.7 4,352,696 + Psyr_3666 0.38 +3.2 4,352,696 + Psyr_3666 0.38 -1.9 4,352,696 + Psyr_3666 0.38 +2.1 4,352,697 - Psyr_3666 0.38 -1.4 4,352,697 - Psyr_3666 0.38 +1.1 4,352,697 - Psyr_3666 0.38 -2.1 4,352,697 - Psyr_3666 0.38 -4.5 4,352,697 - Psyr_3666 0.38 +2.1 4,352,697 - Psyr_3666 0.38 -1.2 4,352,697 - Psyr_3666 0.38 -3.0 4,352,697 - Psyr_3666 0.38 +1.1 4,352,697 - Psyr_3666 0.38 +1.7 4,352,697 - Psyr_3666 0.38 -2.7 4,352,697 - Psyr_3666 0.38 -3.2 4,352,697 - Psyr_3666 0.38 +0.8 4,352,697 - Psyr_3666 0.38 +3.5 4,352,697 - Psyr_3666 0.38 +2.1 4,352,697 - Psyr_3666 0.38 -1.7 4,352,697 - Psyr_3666 0.38 +1.0 4,352,697 - Psyr_3666 0.38 -0.2 4,352,822 + Psyr_3666 0.47 +1.7 4,353,014 + Psyr_3666 0.60 +1.7 4,353,015 - Psyr_3666 0.60 +1.7 4,353,581 - +3.1 4,353,581 - -0.7 4,353,628 + -0.9 4,353,667 - -0.2 4,353,737 - +3.2 4,353,766 - -4.1 4,353,769 - +1.1 4,353,833 + -4.7 4,353,924 + +1.7 4,353,925 - +1.1 4,353,938 - -0.7 4,354,039 + +0.1 4,354,039 + -2.8 4,354,039 + +2.4 4,354,039 + +1.7 4,354,039 + -2.9 4,354,040 - -3.9 4,354,040 - +3.8 4,354,040 - -4.6 4,354,040 - +0.1 4,354,040 - +4.1 4,354,076 + +1.7 4,354,076 + -3.9 4,354,139 + +2.7 4,354,139 + -1.7 4,354,140 - +1.1 4,354,140 - -1.3 4,354,140 - +0.1 4,354,218 + -2.4 4,354,219 - -0.3 4,354,223 + +3.9 4,354,223 + -0.5 4,354,223 + +0.1 4,354,224 - +0.1 4,354,350 + Psyr_3667 0.33 -1.0 4,354,415 + Psyr_3667 0.55 -3.0 4,354,415 + Psyr_3667 0.55 -2.4 4,354,473 - Psyr_3667 0.74 +0.1 4,354,473 - Psyr_3667 0.74 +2.4 4,354,523 - +0.9 4,354,596 - -1.1 4,354,596 - +3.1 4,354,598 + +0.1
Or see this region's nucleotide sequence