Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3655 and Psyr_3656 are separated by 123 nucleotides Psyr_3656 and Psyr_3657 overlap by 8 nucleotides Psyr_3657 and Psyr_3658 are separated by 3 nucleotides
Psyr_3655: Psyr_3655 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 4,340,335 to 4,342,797
_3655
Psyr_3656: Psyr_3656 - ABC transporter, transmembrane region:ABC transporter, at 4,342,921 to 4,344,747
_3656
Psyr_3657: Psyr_3657 - DSBA oxidoreductase, at 4,344,740 to 4,345,372
_3657
Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329
_3658
Position (kb) 4342
4343
4344
4345 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4341.992 kb on + strand, within Psyr_3655 at 4341.992 kb on + strand, within Psyr_3655 at 4341.992 kb on + strand, within Psyr_3655 at 4341.992 kb on + strand, within Psyr_3655 at 4341.992 kb on + strand, within Psyr_3655 at 4341.992 kb on + strand, within Psyr_3655 at 4342.147 kb on + strand, within Psyr_3655 at 4342.361 kb on + strand, within Psyr_3655 at 4342.362 kb on - strand, within Psyr_3655 at 4342.427 kb on + strand, within Psyr_3655 at 4342.427 kb on + strand, within Psyr_3655 at 4342.427 kb on + strand, within Psyr_3655 at 4342.428 kb on - strand, within Psyr_3655 at 4342.428 kb on - strand, within Psyr_3655 at 4342.428 kb on - strand, within Psyr_3655 at 4342.581 kb on - strand at 4342.619 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.670 kb on + strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.671 kb on - strand at 4342.824 kb on + strand at 4342.825 kb on - strand at 4342.825 kb on - strand at 4342.934 kb on - strand at 4342.943 kb on + strand at 4342.944 kb on - strand at 4342.956 kb on - strand at 4343.004 kb on + strand at 4343.004 kb on + strand at 4343.005 kb on - strand at 4343.005 kb on - strand at 4343.020 kb on + strand at 4343.020 kb on + strand at 4343.021 kb on - strand at 4343.027 kb on - strand at 4343.120 kb on + strand, within Psyr_3656 at 4343.120 kb on + strand, within Psyr_3656 at 4343.486 kb on + strand, within Psyr_3656 at 4343.486 kb on + strand, within Psyr_3656 at 4343.486 kb on + strand, within Psyr_3656 at 4343.487 kb on - strand, within Psyr_3656 at 4343.487 kb on - strand, within Psyr_3656 at 4343.487 kb on - strand, within Psyr_3656 at 4343.741 kb on + strand, within Psyr_3656 at 4343.741 kb on + strand, within Psyr_3656 at 4343.741 kb on + strand, within Psyr_3656 at 4343.742 kb on - strand, within Psyr_3656 at 4343.742 kb on - strand, within Psyr_3656 at 4343.744 kb on + strand, within Psyr_3656 at 4343.744 kb on + strand, within Psyr_3656 at 4343.745 kb on - strand, within Psyr_3656 at 4343.750 kb on + strand, within Psyr_3656 at 4343.751 kb on - strand, within Psyr_3656 at 4343.751 kb on - strand, within Psyr_3656 at 4343.798 kb on + strand, within Psyr_3656 at 4343.851 kb on - strand, within Psyr_3656 at 4343.948 kb on + strand, within Psyr_3656 at 4343.949 kb on - strand, within Psyr_3656 at 4343.949 kb on - strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.069 kb on + strand, within Psyr_3656 at 4344.070 kb on - strand, within Psyr_3656 at 4344.070 kb on - strand, within Psyr_3656 at 4344.070 kb on - strand, within Psyr_3656 at 4344.070 kb on - strand, within Psyr_3656 at 4344.070 kb on - strand, within Psyr_3656 at 4344.321 kb on - strand, within Psyr_3656 at 4344.369 kb on + strand, within Psyr_3656 at 4344.374 kb on + strand, within Psyr_3656 at 4344.375 kb on - strand, within Psyr_3656 at 4344.480 kb on - strand, within Psyr_3656 at 4344.509 kb on - strand, within Psyr_3656 at 4344.509 kb on - strand, within Psyr_3656 at 4345.020 kb on + strand, within Psyr_3657 at 4345.020 kb on + strand, within Psyr_3657 at 4345.020 kb on + strand, within Psyr_3657 at 4345.021 kb on - strand, within Psyr_3657 at 4345.021 kb on - strand, within Psyr_3657 at 4345.108 kb on + strand, within Psyr_3657 at 4345.109 kb on - strand, within Psyr_3657 at 4345.117 kb on - strand, within Psyr_3657 at 4345.200 kb on + strand, within Psyr_3657 at 4345.201 kb on - strand, within Psyr_3657 at 4345.353 kb on + strand at 4345.353 kb on + strand at 4345.353 kb on + strand at 4345.353 kb on + strand at 4345.353 kb on + strand at 4345.354 kb on - strand at 4345.354 kb on - strand at 4345.354 kb on - strand at 4345.354 kb on - strand at 4345.354 kb on - strand at 4345.354 kb on - strand at 4345.398 kb on + strand at 4345.399 kb on - strand at 4345.399 kb on - strand at 4345.399 kb on - strand at 4345.530 kb on + strand, within Psyr_3658 at 4345.530 kb on + strand, within Psyr_3658 at 4345.530 kb on + strand, within Psyr_3658 at 4345.530 kb on + strand, within Psyr_3658 at 4345.590 kb on + strand, within Psyr_3658 at 4345.591 kb on - strand, within Psyr_3658 at 4345.591 kb on - strand, within Psyr_3658 at 4345.689 kb on + strand, within Psyr_3658 at 4345.689 kb on + strand, within Psyr_3658 at 4345.716 kb on + strand, within Psyr_3658 at 4345.716 kb on + strand, within Psyr_3658 at 4345.716 kb on + strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.717 kb on - strand, within Psyr_3658 at 4345.746 kb on + strand, within Psyr_3658 at 4345.746 kb on + strand, within Psyr_3658 at 4345.746 kb on + strand, within Psyr_3658 at 4345.747 kb on - strand, within Psyr_3658 at 4345.747 kb on - strand, within Psyr_3658 at 4345.747 kb on - strand, within Psyr_3658 at 4345.747 kb on - strand, within Psyr_3658
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,341,992 + Psyr_3655 0.67 -2.6 4,341,992 + Psyr_3655 0.67 +0.1 4,341,992 + Psyr_3655 0.67 -1.7 4,341,992 + Psyr_3655 0.67 +2.1 4,341,992 + Psyr_3655 0.67 +0.1 4,341,992 + Psyr_3655 0.67 +1.6 4,342,147 + Psyr_3655 0.74 -4.5 4,342,361 + Psyr_3655 0.82 +2.4 4,342,362 - Psyr_3655 0.82 -1.3 4,342,427 + Psyr_3655 0.85 -3.6 4,342,427 + Psyr_3655 0.85 +0.1 4,342,427 + Psyr_3655 0.85 -1.4 4,342,428 - Psyr_3655 0.85 -1.5 4,342,428 - Psyr_3655 0.85 -3.2 4,342,428 - Psyr_3655 0.85 +0.1 4,342,581 - -3.4 4,342,619 + -5.2 4,342,670 + +0.1 4,342,670 + -2.6 4,342,670 + -2.7 4,342,670 + -3.4 4,342,670 + +4.8 4,342,670 + +0.1 4,342,670 + +0.1 4,342,670 + -5.0 4,342,670 + +2.8 4,342,670 + +0.3 4,342,670 + -2.4 4,342,670 + +0.1 4,342,671 - -1.8 4,342,671 - +3.2 4,342,671 - +2.4 4,342,671 - -0.6 4,342,671 - -1.6 4,342,671 - +0.1 4,342,671 - -2.7 4,342,671 - +2.1 4,342,824 + +2.4 4,342,825 - +4.0 4,342,825 - -3.5 4,342,934 - +4.4 4,342,943 + +0.1 4,342,944 - +1.1 4,342,956 - -0.6 4,343,004 + +3.6 4,343,004 + +0.6 4,343,005 - -1.5 4,343,005 - -3.3 4,343,020 + -2.8 4,343,020 + -0.1 4,343,021 - -0.3 4,343,027 - -1.3 4,343,120 + Psyr_3656 0.11 -0.6 4,343,120 + Psyr_3656 0.11 -1.2 4,343,486 + Psyr_3656 0.31 -0.5 4,343,486 + Psyr_3656 0.31 -0.9 4,343,486 + Psyr_3656 0.31 +3.4 4,343,487 - Psyr_3656 0.31 +1.6 4,343,487 - Psyr_3656 0.31 +1.1 4,343,487 - Psyr_3656 0.31 -0.8 4,343,741 + Psyr_3656 0.45 +2.6 4,343,741 + Psyr_3656 0.45 -0.4 4,343,741 + Psyr_3656 0.45 -2.1 4,343,742 - Psyr_3656 0.45 -0.7 4,343,742 - Psyr_3656 0.45 +2.4 4,343,744 + Psyr_3656 0.45 +0.1 4,343,744 + Psyr_3656 0.45 +1.1 4,343,745 - Psyr_3656 0.45 +0.7 4,343,750 + Psyr_3656 0.45 -0.8 4,343,751 - Psyr_3656 0.45 -1.9 4,343,751 - Psyr_3656 0.45 -4.5 4,343,798 + Psyr_3656 0.48 -1.9 4,343,851 - Psyr_3656 0.51 +0.1 4,343,948 + Psyr_3656 0.56 -2.9 4,343,949 - Psyr_3656 0.56 +0.1 4,343,949 - Psyr_3656 0.56 +1.6 4,344,069 + Psyr_3656 0.63 -1.9 4,344,069 + Psyr_3656 0.63 +3.4 4,344,069 + Psyr_3656 0.63 -4.0 4,344,069 + Psyr_3656 0.63 -2.3 4,344,069 + Psyr_3656 0.63 +0.1 4,344,069 + Psyr_3656 0.63 +0.1 4,344,070 - Psyr_3656 0.63 +3.6 4,344,070 - Psyr_3656 0.63 -1.5 4,344,070 - Psyr_3656 0.63 +0.1 4,344,070 - Psyr_3656 0.63 +3.4 4,344,070 - Psyr_3656 0.63 -2.3 4,344,321 - Psyr_3656 0.77 +0.1 4,344,369 + Psyr_3656 0.79 +0.1 4,344,374 + Psyr_3656 0.80 -0.7 4,344,375 - Psyr_3656 0.80 +2.6 4,344,480 - Psyr_3656 0.85 -0.6 4,344,509 - Psyr_3656 0.87 -3.6 4,344,509 - Psyr_3656 0.87 +1.6 4,345,020 + Psyr_3657 0.44 +2.1 4,345,020 + Psyr_3657 0.44 -1.2 4,345,020 + Psyr_3657 0.44 +3.2 4,345,021 - Psyr_3657 0.44 +3.6 4,345,021 - Psyr_3657 0.44 -1.5 4,345,108 + Psyr_3657 0.58 -0.5 4,345,109 - Psyr_3657 0.58 +1.1 4,345,117 - Psyr_3657 0.60 +2.1 4,345,200 + Psyr_3657 0.73 -1.6 4,345,201 - Psyr_3657 0.73 +3.4 4,345,353 + +0.4 4,345,353 + -2.5 4,345,353 + +0.6 4,345,353 + -0.9 4,345,353 + +2.6 4,345,354 - +3.8 4,345,354 - -1.3 4,345,354 - -2.5 4,345,354 - -1.7 4,345,354 - +2.9 4,345,354 - +3.1 4,345,398 + +2.4 4,345,399 - +0.7 4,345,399 - -1.1 4,345,399 - -1.8 4,345,530 + Psyr_3658 0.16 -2.8 4,345,530 + Psyr_3658 0.16 +4.8 4,345,530 + Psyr_3658 0.16 +2.9 4,345,530 + Psyr_3658 0.16 +2.1 4,345,590 + Psyr_3658 0.22 -4.5 4,345,591 - Psyr_3658 0.23 -0.9 4,345,591 - Psyr_3658 0.23 +3.5 4,345,689 + Psyr_3658 0.33 +2.9 4,345,689 + Psyr_3658 0.33 -2.0 4,345,716 + Psyr_3658 0.36 -2.7 4,345,716 + Psyr_3658 0.36 -1.8 4,345,716 + Psyr_3658 0.36 -2.1 4,345,717 - Psyr_3658 0.36 +0.1 4,345,717 - Psyr_3658 0.36 +0.3 4,345,717 - Psyr_3658 0.36 -1.3 4,345,717 - Psyr_3658 0.36 -1.4 4,345,717 - Psyr_3658 0.36 -1.2 4,345,717 - Psyr_3658 0.36 -0.5 4,345,746 + Psyr_3658 0.39 -4.1 4,345,746 + Psyr_3658 0.39 +0.1 4,345,746 + Psyr_3658 0.39 -4.2 4,345,747 - Psyr_3658 0.39 +1.1 4,345,747 - Psyr_3658 0.39 +2.1 4,345,747 - Psyr_3658 0.39 +4.0 4,345,747 - Psyr_3658 0.39 -0.7
Or see this region's nucleotide sequence