Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2758

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2756 and Psyr_2757 are separated by 0 nucleotidesPsyr_2757 and Psyr_2758 are separated by 3 nucleotidesPsyr_2758 and Psyr_2759 are separated by 89 nucleotides Psyr_2756: Psyr_2756 - Molybdenum ABC transporter, periplasmic binding protein, at 3,344,173 to 3,344,940 _2756 Psyr_2757: Psyr_2757 - Binding-protein-dependent transport systems inner membrane component, at 3,344,941 to 3,345,621 _2757 Psyr_2758: Psyr_2758 - ABC transporter:TOBE, at 3,345,625 to 3,346,713 _2758 Psyr_2759: Psyr_2759 - Eukaryotic-like DNA topoisomerase I, at 3,346,803 to 3,347,873 _2759 Position (kb) 3345 3346 3347Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3344.688 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.938 kb on + strandat 3344.938 kb on + strandat 3344.939 kb on - strandat 3345.134 kb on - strand, within Psyr_2757at 3345.177 kb on + strand, within Psyr_2757at 3345.177 kb on + strand, within Psyr_2757at 3345.321 kb on + strand, within Psyr_2757at 3345.322 kb on - strand, within Psyr_2757at 3345.440 kb on + strand, within Psyr_2757at 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.871 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.266 kb on - strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.379 kb on - strand, within Psyr_2758at 3346.636 kb on + strandat 3346.743 kb on + strandat 3346.758 kb on + strandat 3346.782 kb on - strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.799 kb on - strandat 3346.799 kb on - strandat 3346.848 kb on + strandat 3346.849 kb on - strandat 3346.852 kb on + strandat 3346.852 kb on + strandat 3346.852 kb on + strandat 3346.853 kb on - strandat 3346.853 kb on - strandat 3346.874 kb on + strandat 3346.886 kb on - strandat 3346.886 kb on - strandat 3346.905 kb on + strandat 3346.906 kb on - strandat 3347.089 kb on + strand, within Psyr_2759at 3347.089 kb on + strand, within Psyr_2759at 3347.090 kb on - strand, within Psyr_2759at 3347.107 kb on - strand, within Psyr_2759at 3347.259 kb on + strand, within Psyr_2759at 3347.259 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.468 kb on - strand, within Psyr_2759at 3347.503 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,344,688 + Psyr_2756 0.67 -1.3
3,344,755 + Psyr_2756 0.76 -0.6
3,344,755 + Psyr_2756 0.76 -2.6
3,344,755 + Psyr_2756 0.76 -1.2
3,344,756 - Psyr_2756 0.76 +2.3
3,344,756 - Psyr_2756 0.76 -2.6
3,344,756 - Psyr_2756 0.76 +3.8
3,344,756 - Psyr_2756 0.76 -4.1
3,344,756 - Psyr_2756 0.76 -2.6
3,344,938 + +0.4
3,344,938 + -4.1
3,344,939 - -4.2
3,345,134 - Psyr_2757 0.28 +1.4
3,345,177 + Psyr_2757 0.35 +1.8
3,345,177 + Psyr_2757 0.35 -3.7
3,345,321 + Psyr_2757 0.56 -1.1
3,345,322 - Psyr_2757 0.56 -4.2
3,345,440 + Psyr_2757 0.73 +1.0
3,345,587 - +0.4
3,345,587 - -1.9
3,345,587 - -3.3
3,345,587 - -2.7
3,345,871 + Psyr_2758 0.23 +3.8
3,346,195 + Psyr_2758 0.52 +1.4
3,346,195 + Psyr_2758 0.52 -3.4
3,346,196 - Psyr_2758 0.52 -0.4
3,346,196 - Psyr_2758 0.52 +2.4
3,346,196 - Psyr_2758 0.52 -1.8
3,346,266 - Psyr_2758 0.59 -0.6
3,346,366 + Psyr_2758 0.68 -2.4
3,346,366 + Psyr_2758 0.68 -1.2
3,346,367 - Psyr_2758 0.68 -0.6
3,346,367 - Psyr_2758 0.68 +1.8
3,346,367 - Psyr_2758 0.68 -2.5
3,346,379 - Psyr_2758 0.69 +2.9
3,346,636 + -1.3
3,346,743 + +1.0
3,346,758 + -1.8
3,346,782 - -0.9
3,346,798 + +1.0
3,346,798 + -0.6
3,346,798 + -3.2
3,346,798 + +1.4
3,346,799 - -2.0
3,346,799 - -1.9
3,346,848 + -0.2
3,346,849 - +3.4
3,346,852 + -3.3
3,346,852 + -2.9
3,346,852 + -2.5
3,346,853 - -2.3
3,346,853 - +0.0
3,346,874 + +1.0
3,346,886 - +0.9
3,346,886 - -0.2
3,346,905 + +3.0
3,346,906 - -1.3
3,347,089 + Psyr_2759 0.27 +4.0
3,347,089 + Psyr_2759 0.27 -0.1
3,347,090 - Psyr_2759 0.27 -0.2
3,347,107 - Psyr_2759 0.28 -1.3
3,347,259 + Psyr_2759 0.43 +0.4
3,347,259 + Psyr_2759 0.43 -2.9
3,347,369 + Psyr_2759 0.53 +1.0
3,347,369 + Psyr_2759 0.53 -1.5
3,347,369 + Psyr_2759 0.53 +2.0
3,347,370 - Psyr_2759 0.53 -1.8
3,347,370 - Psyr_2759 0.53 -4.9
3,347,468 - Psyr_2759 0.62 -1.1
3,347,503 - Psyr_2759 0.65 +3.3
3,347,695 - Psyr_2759 0.83 +0.6
3,347,695 - Psyr_2759 0.83 -0.4
3,347,695 - Psyr_2759 0.83 -0.4
3,347,695 - Psyr_2759 0.83 -0.6

Or see this region's nucleotide sequence