Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1698

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1696 and Psyr_1697 are separated by 27 nucleotidesPsyr_1697 and Psyr_1698 are separated by 11 nucleotidesPsyr_1698 and Psyr_1699 are separated by 516 nucleotides Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006 _1696 Psyr_1697: Psyr_1697 - conserved hypothetical protein, at 1,904,034 to 1,904,780 _1697 Psyr_1698: Psyr_1698 - Glutathionylspermidine synthase, at 1,904,792 to 1,905,949 _1698 Psyr_1699: Psyr_1699 - Protein of unknown function DUF1329, at 1,906,466 to 1,907,821 _1699 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1903.796 kb on + strand, within Psyr_1696at 1903.803 kb on + strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.942 kb on - strand, within Psyr_1696at 1903.942 kb on - strand, within Psyr_1696at 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.200 kb on - strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.318 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.493 kb on + strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.508 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.622 kb on + strand, within Psyr_1697at 1904.622 kb on + strand, within Psyr_1697at 1904.903 kb on + strandat 1904.903 kb on + strandat 1904.904 kb on - strandat 1905.135 kb on - strand, within Psyr_1698at 1905.135 kb on - strand, within Psyr_1698at 1905.308 kb on + strand, within Psyr_1698at 1905.499 kb on + strand, within Psyr_1698at 1905.500 kb on - strand, within Psyr_1698at 1905.698 kb on + strand, within Psyr_1698at 1905.800 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strandat 1905.830 kb on + strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.992 kb on - strandat 1905.992 kb on - strandat 1906.007 kb on - strandat 1906.019 kb on + strandat 1906.020 kb on - strandat 1906.020 kb on - strandat 1906.021 kb on + strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.055 kb on - strandat 1906.140 kb on + strandat 1906.145 kb on + strandat 1906.145 kb on + strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.149 kb on + strandat 1906.149 kb on + strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.195 kb on + strandat 1906.275 kb on - strandat 1906.283 kb on - strandat 1906.283 kb on - strandat 1906.295 kb on + strandat 1906.315 kb on + strandat 1906.315 kb on + strandat 1906.316 kb on - strandat 1906.384 kb on + strandat 1906.398 kb on + strandat 1906.399 kb on - strandat 1906.408 kb on + strandat 1906.409 kb on - strandat 1906.588 kb on + strandat 1906.802 kb on + strand, within Psyr_1699at 1906.842 kb on - strand, within Psyr_1699at 1906.842 kb on - strand, within Psyr_1699

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,903,796 + Psyr_1696 0.50 +2.6
1,903,803 + Psyr_1696 0.52 -1.7
1,903,804 - Psyr_1696 0.52 -0.7
1,903,804 - Psyr_1696 0.52 +0.2
1,903,804 - Psyr_1696 0.52 +0.1
1,903,804 - Psyr_1696 0.52 -0.8
1,903,804 - Psyr_1696 0.52 +2.9
1,903,942 - Psyr_1696 0.85 -1.2
1,903,942 - Psyr_1696 0.85 -2.6
1,904,042 + +3.9
1,904,042 + -2.6
1,904,042 + -0.8
1,904,043 - +1.1
1,904,043 - +2.6
1,904,043 - -0.2
1,904,183 + Psyr_1697 0.20 -0.7
1,904,183 + Psyr_1697 0.20 +0.5
1,904,183 + Psyr_1697 0.20 +0.1
1,904,199 + Psyr_1697 0.22 +0.1
1,904,199 + Psyr_1697 0.22 -1.4
1,904,199 + Psyr_1697 0.22 -1.7
1,904,199 + Psyr_1697 0.22 -0.7
1,904,199 + Psyr_1697 0.22 -2.2
1,904,199 + Psyr_1697 0.22 +2.9
1,904,200 - Psyr_1697 0.22 -1.9
1,904,241 + Psyr_1697 0.28 +3.4
1,904,241 + Psyr_1697 0.28 -0.5
1,904,241 + Psyr_1697 0.28 +1.1
1,904,241 + Psyr_1697 0.28 +0.5
1,904,241 + Psyr_1697 0.28 -2.3
1,904,241 + Psyr_1697 0.28 -2.5
1,904,241 + Psyr_1697 0.28 -1.9
1,904,241 + Psyr_1697 0.28 -0.4
1,904,241 + Psyr_1697 0.28 +2.1
1,904,242 - Psyr_1697 0.28 +2.1
1,904,310 + Psyr_1697 0.37 +1.1
1,904,310 + Psyr_1697 0.37 -1.9
1,904,310 + Psyr_1697 0.37 -0.6
1,904,310 + Psyr_1697 0.37 -1.3
1,904,310 + Psyr_1697 0.37 +0.1
1,904,310 + Psyr_1697 0.37 -0.9
1,904,310 + Psyr_1697 0.37 +2.9
1,904,310 + Psyr_1697 0.37 -0.9
1,904,311 - Psyr_1697 0.37 -2.9
1,904,311 - Psyr_1697 0.37 -2.5
1,904,311 - Psyr_1697 0.37 -3.9
1,904,311 - Psyr_1697 0.37 +2.4
1,904,318 + Psyr_1697 0.38 +3.5
1,904,490 + Psyr_1697 0.61 -0.9
1,904,490 + Psyr_1697 0.61 -1.5
1,904,490 + Psyr_1697 0.61 -1.3
1,904,493 + Psyr_1697 0.61 +2.1
1,904,494 - Psyr_1697 0.62 -4.0
1,904,494 - Psyr_1697 0.62 +3.1
1,904,508 + Psyr_1697 0.63 -1.9
1,904,535 + Psyr_1697 0.67 -1.3
1,904,538 + Psyr_1697 0.67 +0.5
1,904,538 + Psyr_1697 0.67 -1.7
1,904,539 - Psyr_1697 0.68 +0.1
1,904,539 - Psyr_1697 0.68 -0.1
1,904,622 + Psyr_1697 0.79 +0.9
1,904,622 + Psyr_1697 0.79 -1.2
1,904,903 + +0.1
1,904,903 + +0.1
1,904,904 - +1.2
1,905,135 - Psyr_1698 0.30 -1.1
1,905,135 - Psyr_1698 0.30 +2.6
1,905,308 + Psyr_1698 0.45 -0.9
1,905,499 + Psyr_1698 0.61 +0.1
1,905,500 - Psyr_1698 0.61 -0.9
1,905,698 + Psyr_1698 0.78 -3.1
1,905,800 + Psyr_1698 0.87 -3.8
1,905,830 + Psyr_1698 0.90 +1.1
1,905,830 + Psyr_1698 0.90 -3.8
1,905,830 + +0.1
1,905,830 + Psyr_1698 0.90 -1.4
1,905,831 - Psyr_1698 0.90 -4.5
1,905,831 - Psyr_1698 0.90 -3.9
1,905,831 - Psyr_1698 0.90 -0.4
1,905,831 - Psyr_1698 0.90 -3.4
1,905,831 - Psyr_1698 0.90 +1.1
1,905,831 - Psyr_1698 0.90 +0.5
1,905,991 + -3.1
1,905,991 + -2.7
1,905,991 + -0.9
1,905,991 + +0.1
1,905,991 + -0.9
1,905,991 + -2.5
1,905,992 - +2.1
1,905,992 - -0.3
1,906,007 - -2.0
1,906,019 + -1.2
1,906,020 - -3.9
1,906,020 - +3.9
1,906,021 + -2.1
1,906,045 - +0.9
1,906,045 - +2.1
1,906,045 - +1.6
1,906,045 - -0.4
1,906,055 - -0.7
1,906,140 + +0.1
1,906,145 + -3.4
1,906,145 + -1.1
1,906,146 - +0.1
1,906,146 - +0.1
1,906,147 + -2.9
1,906,147 + -0.6
1,906,148 - +0.1
1,906,148 - -3.8
1,906,148 - -1.8
1,906,148 - -2.5
1,906,148 - -3.8
1,906,149 + +2.6
1,906,149 + +1.6
1,906,150 - -4.4
1,906,150 - -0.5
1,906,150 - +0.1
1,906,150 - -2.7
1,906,195 + +0.5
1,906,275 - -2.2
1,906,283 - -3.9
1,906,283 - -2.6
1,906,295 + -0.5
1,906,315 + +0.1
1,906,315 + +2.4
1,906,316 - +2.9
1,906,384 + -2.7
1,906,398 + +1.6
1,906,399 - -1.2
1,906,408 + -1.8
1,906,409 - +1.6
1,906,588 + +2.6
1,906,802 + Psyr_1699 0.25 -3.0
1,906,842 - Psyr_1699 0.28 -0.7
1,906,842 - Psyr_1699 0.28 +0.3

Or see this region's nucleotide sequence