Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0450

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0448 and Psyr_0449 are separated by 69 nucleotidesPsyr_0449 and Psyr_0450 are separated by 1 nucleotidesPsyr_0450 and Psyr_0451 are separated by 1 nucleotides Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673 _0448 Psyr_0449: Psyr_0449 - Malonate transporter MadL subunit, at 485,743 to 486,159 _0449 Psyr_0450: Psyr_0450 - Malonate/sodium symporter MadM subunit, at 486,161 to 486,925 _0450 Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853 _0451 Position (kb) 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 485.165 kb on + strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.401 kb on + strand, within Psyr_0448at 485.402 kb on - strand, within Psyr_0448at 485.692 kb on - strandat 485.692 kb on - strandat 485.748 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.753 kb on - strandat 485.766 kb on - strandat 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.499 kb on - strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.924 kb on - strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.813 kb on - strandat 487.813 kb on - strandat 487.865 kb on + strandat 487.872 kb on - strandat 487.872 kb on - strandat 487.894 kb on + strandat 487.894 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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485,165 + Psyr_0448 0.46 +0.6
485,165 + Psyr_0448 0.46 -0.6
485,166 - Psyr_0448 0.46 +1.9
485,166 - Psyr_0448 0.46 -2.7
485,166 - Psyr_0448 0.46 -3.8
485,166 - Psyr_0448 0.46 +1.5
485,396 + Psyr_0448 0.70 -0.1
485,396 + Psyr_0448 0.70 -0.7
485,396 + Psyr_0448 0.70 +1.9
485,396 + Psyr_0448 0.70 +3.6
485,396 + Psyr_0448 0.70 -1.8
485,397 - Psyr_0448 0.70 +2.9
485,397 - Psyr_0448 0.70 -0.4
485,401 + Psyr_0448 0.71 +2.2
485,402 - Psyr_0448 0.71 +2.7
485,692 - -0.9
485,692 - -0.6
485,748 + +4.1
485,752 + -2.6
485,752 + +3.9
485,752 + -4.6
485,753 - +1.6
485,766 - -2.1
485,953 + Psyr_0449 0.50 +2.2
485,953 + Psyr_0449 0.50 -0.3
485,953 + Psyr_0449 0.50 +0.9
485,953 + Psyr_0449 0.50 -3.0
485,953 + Psyr_0449 0.50 +1.5
485,953 + Psyr_0449 0.50 -0.3
485,954 - Psyr_0449 0.51 -0.4
485,954 - Psyr_0449 0.51 -0.5
485,954 - Psyr_0449 0.51 -0.8
485,954 - Psyr_0449 0.51 -1.5
486,160 + -0.9
486,160 + -0.9
486,160 + -1.8
486,160 + +3.5
486,161 - +2.3
486,161 - -1.9
486,161 - -3.5
486,499 - Psyr_0450 0.44 +0.3
486,602 + Psyr_0450 0.58 -1.3
486,602 + Psyr_0450 0.58 +3.1
486,602 + Psyr_0450 0.58 -0.3
486,602 + Psyr_0450 0.58 +2.2
486,602 + Psyr_0450 0.58 +2.5
486,602 + Psyr_0450 0.58 -3.1
486,602 + Psyr_0450 0.58 +0.3
486,602 + Psyr_0450 0.58 +1.2
486,602 + Psyr_0450 0.58 -0.6
486,602 + Psyr_0450 0.58 -0.4
486,602 + Psyr_0450 0.58 -1.5
486,602 + Psyr_0450 0.58 +4.1
486,602 + Psyr_0450 0.58 -0.7
486,602 + Psyr_0450 0.58 +0.6
486,603 - Psyr_0450 0.58 +0.1
486,603 - Psyr_0450 0.58 -1.2
486,603 - Psyr_0450 0.58 -0.1
486,603 - Psyr_0450 0.58 +0.9
486,603 - Psyr_0450 0.58 +1.5
486,603 - Psyr_0450 0.58 -0.9
486,603 - Psyr_0450 0.58 +2.5
486,603 - Psyr_0450 0.58 -0.5
486,651 + Psyr_0450 0.64 +1.5
486,651 + Psyr_0450 0.64 -1.9
486,652 - Psyr_0450 0.64 +1.2
486,652 - Psyr_0450 0.64 -1.2
486,652 - Psyr_0450 0.64 -0.1
486,652 - Psyr_0450 0.64 +1.3
486,652 - Psyr_0450 0.64 -1.7
486,652 - Psyr_0450 0.64 -3.1
486,896 + -2.0
486,896 + -1.6
486,896 + -2.3
486,896 + +0.6
486,897 - -2.7
486,897 - -1.7
486,897 - -2.5
486,897 - -0.7
486,924 - -2.7
486,958 + +3.2
486,958 + -2.1
486,958 + -3.1
486,958 + +0.4
486,959 - -0.8
486,959 - -0.8
486,959 - +3.6
486,959 - -1.2
486,959 - -1.0
487,435 + Psyr_0451 0.55 +3.2
487,435 + Psyr_0451 0.55 -1.4
487,435 + Psyr_0451 0.55 +0.7
487,436 - Psyr_0451 0.55 -3.0
487,436 - Psyr_0451 0.55 -0.1
487,436 - Psyr_0451 0.55 -3.1
487,541 - Psyr_0451 0.66 -2.5
487,541 - Psyr_0451 0.66 -0.8
487,651 + Psyr_0451 0.78 -1.4
487,651 + Psyr_0451 0.78 -1.3
487,651 + Psyr_0451 0.78 -0.5
487,651 + Psyr_0451 0.78 -2.5
487,652 - Psyr_0451 0.78 +1.5
487,652 - Psyr_0451 0.78 +2.5
487,652 - Psyr_0451 0.78 +2.9
487,652 - Psyr_0451 0.78 +4.1
487,652 - Psyr_0451 0.78 +0.9
487,652 - Psyr_0451 0.78 -2.9
487,752 - Psyr_0451 0.89 -1.7
487,752 - Psyr_0451 0.89 +2.5
487,813 - -2.6
487,813 - -1.7
487,865 + +0.7
487,872 - +0.9
487,872 - +3.4
487,894 + -1.2
487,894 + +4.2
487,904 + +2.5
487,904 + -1.7
487,904 + +0.6
487,904 + +2.2
487,904 + -0.1
487,904 + +3.6
487,904 + +3.8
487,904 + -2.5
487,904 + +2.2
487,905 - -4.0
487,905 - -1.2
487,905 - -1.2
487,905 - +3.4
487,905 - -1.2
487,905 - -0.9
487,905 - -4.4
487,905 - -0.4
487,905 - -2.8
487,905 - +3.2
487,905 - -1.6
487,905 - +4.0
487,905 - +2.2
487,905 - -3.8

Or see this region's nucleotide sequence