Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1818

Experiment: Gentamicin 0.00048828125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.00048828125 mg/ml
1,890,899	+	ltnB	Synpcc7942_1816	0.84	-0.7
1,890,968	+	ltnB	Synpcc7942_1816	0.86	+1.3
1,890,970	+	ltnB	Synpcc7942_1816	0.86	+1.0
1,890,976	+	ltnB	Synpcc7942_1816	0.86	-0.4
1,890,984	+	ltnB	Synpcc7942_1816	0.87	-0.9
1,890,984	-	ltnB	Synpcc7942_1816	0.87	+0.6
1,890,988	-	ltnB	Synpcc7942_1816	0.87	+1.3
1,890,998	+	ltnB	Synpcc7942_1816	0.87	-0.1
1,891,021	-	ltnB	Synpcc7942_1816	0.88	-1.7
1,891,035	-	ltnB	Synpcc7942_1816	0.88	+0.2
1,891,044	+	ltnB	Synpcc7942_1816	0.89	+1.5
1,891,053	+	ltnB	Synpcc7942_1816	0.89	-0.1
1,891,056	+	ltnB	Synpcc7942_1816	0.89	+0.8
1,891,056	+	ltnB	Synpcc7942_1816	0.89	+2.8
1,891,064	-	ltnB	Synpcc7942_1816	0.89	+0.8
1,891,076	+	ltnB	Synpcc7942_1816	0.90	+1.2
1,891,112	-				+1.9
1,891,117	-				-1.1
1,891,136	-				-0.1
1,891,148	+				-0.3
1,891,197	+				-0.5
1,891,205	-				+1.1
1,891,209	+				-1.0
1,891,211	+				+0.6
1,891,213	-				-0.1
1,891,213	-				+1.3
1,891,229	-				+0.6
1,891,236	-				+1.0
1,891,238	+				-0.8
1,891,242	+				-0.6
1,891,242	+				+2.4
1,891,257	-				-2.1
1,891,257	-				-0.7
1,891,268	-				+1.1
1,891,270	+				-0.4
1,891,273	-				+1.4
1,891,281	+				+0.8
1,891,289	-				-0.1
1,891,310	-				+0.2
1,891,326	+				+0.5
1,891,326	+				+0.7
1,891,326	+				-0.3
1,891,334	-				+1.6
1,891,334	-				-2.1
1,891,346	-				-1.1
1,891,387	-				-0.3
1,891,396	-				+1.0
1,891,397	+				+1.3
1,891,409	-				+0.5
1,891,443	-				+0.6
1,891,461	-	ltnA	Synpcc7942_1817	0.10	-0.4
1,891,461	-	ltnA	Synpcc7942_1817	0.10	+0.9
1,891,489	-	ltnA	Synpcc7942_1817	0.18	-0.5
1,891,499	-	ltnA	Synpcc7942_1817	0.21	+0.5
1,891,572	+	ltnA	Synpcc7942_1817	0.41	+0.9
1,891,580	-	ltnA	Synpcc7942_1817	0.43	-0.4
1,891,580	-	ltnA	Synpcc7942_1817	0.43	+0.4
1,891,582	+	ltnA	Synpcc7942_1817	0.43	-0.7
1,891,588	+	ltnA	Synpcc7942_1817	0.45	+0.3
1,891,590	-	ltnA	Synpcc7942_1817	0.46	+0.9
1,891,591	-	ltnA	Synpcc7942_1817	0.46	-1.7
1,891,627	+	ltnA	Synpcc7942_1817	0.56	+0.1
1,891,627	+	ltnA	Synpcc7942_1817	0.56	+0.3
1,891,635	-	ltnA	Synpcc7942_1817	0.58	-3.3
1,891,635	-	ltnA	Synpcc7942_1817	0.58	+0.8
1,891,685	+	ltnA	Synpcc7942_1817	0.72	+1.6
1,891,697	+	ltnA	Synpcc7942_1817	0.75	+0.3
1,891,705	-	ltnA	Synpcc7942_1817	0.77	-2.1
1,891,707	+	ltnA	Synpcc7942_1817	0.78	-1.3
1,891,785	-				+1.0
1,891,788	+				+1.6
1,891,788	+				-2.3
1,891,788	+				-0.7
1,891,788	+				+1.1
1,891,788	+				+0.6
1,891,796	-				+0.0
1,891,805	-				+1.4
1,891,856	+				+0.4
1,891,883	+				+0.9
1,891,889	+				-2.7
1,891,891	-				+1.2
1,892,142	+		Synpcc7942_1818	0.79	-0.2
1,892,147	+		Synpcc7942_1818	0.81	-0.2
1,892,147	+		Synpcc7942_1818	0.81	+1.9
1,892,150	-		Synpcc7942_1818	0.81	-1.7
1,892,150	-		Synpcc7942_1818	0.81	-2.7
1,892,150	-		Synpcc7942_1818	0.81	-1.7
1,892,150	-		Synpcc7942_1818	0.81	-3.9
1,892,154	-		Synpcc7942_1818	0.83	-2.0
1,892,160	-		Synpcc7942_1818	0.85	-0.4
1,892,196	-				-1.2
1,892,265	+				-0.5
1,892,273	-				+0.4
1,892,305	+				+1.9
1,892,333	+				-0.1
1,892,378	+				-1.7
1,892,386	-				+2.1
1,892,399	+				-0.1
1,892,457	-		Synpcc7942_1819	0.19	+0.5
1,892,479	+		Synpcc7942_1819	0.23	-1.0
1,892,484	+		Synpcc7942_1819	0.24	+0.9
1,892,492	-		Synpcc7942_1819	0.25	+0.7
1,892,492	-		Synpcc7942_1819	0.25	+1.9
1,892,523	+		Synpcc7942_1819	0.30	+0.2
1,892,523	+		Synpcc7942_1819	0.30	-4.0
1,892,523	+		Synpcc7942_1819	0.30	+1.0
1,892,531	-		Synpcc7942_1819	0.32	+1.2
1,892,531	-		Synpcc7942_1819	0.32	+1.8
1,892,531	-		Synpcc7942_1819	0.32	+1.3
1,892,554	+		Synpcc7942_1819	0.36	-0.7
1,892,573	+		Synpcc7942_1819	0.39	+1.3
1,892,633	+		Synpcc7942_1819	0.49	+1.6
1,892,641	+		Synpcc7942_1819	0.50	+3.3
1,892,651	+		Synpcc7942_1819	0.52	-0.4
1,892,664	-		Synpcc7942_1819	0.54	+0.3
1,892,668	+		Synpcc7942_1819	0.55	+0.9
1,892,702	+		Synpcc7942_1819	0.61	-0.1
1,892,710	-		Synpcc7942_1819	0.62	-0.1
1,892,755	+		Synpcc7942_1819	0.70	+2.1
1,892,829	-		Synpcc7942_1819	0.83	+0.1
1,892,856	+		Synpcc7942_1819	0.87	+0.4
1,892,857	-		Synpcc7942_1819	0.87	-1.4
1,892,861	+		Synpcc7942_1819	0.88	+2.1
1,892,864	-				-2.7
1,892,869	-		Synpcc7942_1819	0.89	+1.6
1,892,869	-		Synpcc7942_1819	0.89	+2.0
1,892,869	-		Synpcc7942_1819	0.89	+0.6
1,892,869	-		Synpcc7942_1819	0.89	+1.1
1,892,869	-		Synpcc7942_1819	0.89	+0.7
1,892,869	-		Synpcc7942_1819	0.89	-0.9
1,892,874	+				+0.5
1,892,874	+				+0.3
1,892,908	-				+2.0
1,892,919	+				-0.5
1,892,927	-				-0.7
1,892,947	-				+0.5
1,892,948	+				+1.4
1,892,986	-				+1.3
1,893,019	+				+0.5
1,893,043	+				-2.7
1,893,048	+				+1.1
1,893,053	+				-0.1
1,893,063	+				+2.7
1,893,063	+				-0.1
1,893,067	+				+0.1
1,893,132	+		Synpcc7942_1820	0.17	+1.6
1,893,134	+		Synpcc7942_1820	0.17	-0.6
1,893,134	+		Synpcc7942_1820	0.17	-0.3
1,893,134	+		Synpcc7942_1820	0.17	-3.1
1,893,134	+		Synpcc7942_1820	0.17	+0.9
1,893,134	+		Synpcc7942_1820	0.17	+1.2
1,893,140	-		Synpcc7942_1820	0.18	+1.3
1,893,142	-		Synpcc7942_1820	0.19	+0.3
1,893,142	-		Synpcc7942_1820	0.19	-1.3
1,893,142	-		Synpcc7942_1820	0.19	+1.1
1,893,158	+		Synpcc7942_1820	0.21	+0.0
1,893,166	-		Synpcc7942_1820	0.22	+2.1
1,893,171	-		Synpcc7942_1820	0.22	+0.3
1,893,195	+		Synpcc7942_1820	0.26	+0.5
1,893,196	-		Synpcc7942_1820	0.26	+1.7
1,893,198	+		Synpcc7942_1820	0.26	-0.7
1,893,203	-		Synpcc7942_1820	0.27	+2.0
1,893,203	-		Synpcc7942_1820	0.27	+1.4