Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0854

Experiment: Gentamicin 0.00048828125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapL1 and Synpcc7942_0854 are separated by 127 nucleotidesSynpcc7942_0854 and pixG are separated by 999 nucleotides Synpcc7942_0853: dapL1 - L,L-diaminopimelate aminotransferase, at 848,870 to 850,105 dapL1 Synpcc7942_0854: Synpcc7942_0854 - hypothetical protein, at 850,233 to 852,629 _0854 Synpcc7942_0855: pixG - response regulator receiver domain protein (CheY-like), at 853,629 to 854,882 pixG Position (kb) 850 851 852 853Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 850.089 kb on + strandat 850.100 kb on + strandat 850.108 kb on - strandat 850.108 kb on - strandat 850.108 kb on - strandat 850.108 kb on - strandat 850.114 kb on - strandat 850.136 kb on + strandat 850.146 kb on + strandat 850.158 kb on + strandat 850.164 kb on + strandat 850.214 kb on + strandat 850.214 kb on + strandat 850.230 kb on + strandat 850.230 kb on + strandat 850.230 kb on + strandat 850.237 kb on + strandat 850.237 kb on + strandat 850.238 kb on - strandat 850.238 kb on - strandat 850.243 kb on - strandat 850.245 kb on - strandat 850.245 kb on - strandat 850.245 kb on - strandat 850.245 kb on - strandat 850.265 kb on - strandat 850.270 kb on + strandat 850.275 kb on + strandat 850.278 kb on - strandat 850.292 kb on + strandat 850.292 kb on + strandat 850.292 kb on + strandat 850.300 kb on - strandat 850.312 kb on + strandat 850.330 kb on + strandat 850.331 kb on + strandat 850.342 kb on + strandat 850.352 kb on + strandat 850.428 kb on + strandat 850.464 kb on + strandat 850.464 kb on + strandat 850.496 kb on + strand, within Synpcc7942_0854at 850.498 kb on + strand, within Synpcc7942_0854at 850.498 kb on + strand, within Synpcc7942_0854at 850.498 kb on + strand, within Synpcc7942_0854at 850.504 kb on - strand, within Synpcc7942_0854at 850.506 kb on - strand, within Synpcc7942_0854at 850.526 kb on + strand, within Synpcc7942_0854at 850.529 kb on - strand, within Synpcc7942_0854at 850.531 kb on - strand, within Synpcc7942_0854at 850.547 kb on + strand, within Synpcc7942_0854at 850.585 kb on + strand, within Synpcc7942_0854at 850.589 kb on + strand, within Synpcc7942_0854at 850.593 kb on - strand, within Synpcc7942_0854at 850.597 kb on - strand, within Synpcc7942_0854at 850.604 kb on + strand, within Synpcc7942_0854at 850.617 kb on - strand, within Synpcc7942_0854at 850.620 kb on + strand, within Synpcc7942_0854at 850.630 kb on - strand, within Synpcc7942_0854at 850.640 kb on - strand, within Synpcc7942_0854at 850.654 kb on + strand, within Synpcc7942_0854at 850.654 kb on + strand, within Synpcc7942_0854at 850.664 kb on + strand, within Synpcc7942_0854at 850.793 kb on + strand, within Synpcc7942_0854at 850.793 kb on + strand, within Synpcc7942_0854at 850.839 kb on + strand, within Synpcc7942_0854at 850.839 kb on + strand, within Synpcc7942_0854at 850.839 kb on + strand, within Synpcc7942_0854at 850.839 kb on + strand, within Synpcc7942_0854at 850.847 kb on - strand, within Synpcc7942_0854at 850.847 kb on - strand, within Synpcc7942_0854at 850.847 kb on - strand, within Synpcc7942_0854at 850.847 kb on - strand, within Synpcc7942_0854at 850.847 kb on - strand, within Synpcc7942_0854at 850.862 kb on + strand, within Synpcc7942_0854at 850.866 kb on - strand, within Synpcc7942_0854at 850.870 kb on + strand, within Synpcc7942_0854at 850.899 kb on + strand, within Synpcc7942_0854at 850.906 kb on + strand, within Synpcc7942_0854at 850.913 kb on - strand, within Synpcc7942_0854at 850.945 kb on + strand, within Synpcc7942_0854at 850.978 kb on + strand, within Synpcc7942_0854at 850.982 kb on + strand, within Synpcc7942_0854at 850.984 kb on - strand, within Synpcc7942_0854at 850.986 kb on - strand, within Synpcc7942_0854at 851.059 kb on + strand, within Synpcc7942_0854at 851.060 kb on - strand, within Synpcc7942_0854at 851.064 kb on + strand, within Synpcc7942_0854at 851.103 kb on - strand, within Synpcc7942_0854at 851.129 kb on - strand, within Synpcc7942_0854at 851.138 kb on - strand, within Synpcc7942_0854at 851.148 kb on - strand, within Synpcc7942_0854at 851.152 kb on + strand, within Synpcc7942_0854at 851.152 kb on + strand, within Synpcc7942_0854at 851.152 kb on + strand, within Synpcc7942_0854at 851.152 kb on + strand, within Synpcc7942_0854at 851.201 kb on - strand, within Synpcc7942_0854at 851.228 kb on + strand, within Synpcc7942_0854at 851.235 kb on - strand, within Synpcc7942_0854at 851.248 kb on + strand, within Synpcc7942_0854at 851.248 kb on + strand, within Synpcc7942_0854at 851.280 kb on - strand, within Synpcc7942_0854at 851.280 kb on - strand, within Synpcc7942_0854at 851.301 kb on + strand, within Synpcc7942_0854at 851.301 kb on + strand, within Synpcc7942_0854at 851.330 kb on + strand, within Synpcc7942_0854at 851.338 kb on - strand, within Synpcc7942_0854at 851.365 kb on + strand, within Synpcc7942_0854at 851.383 kb on - strand, within Synpcc7942_0854at 851.389 kb on + strand, within Synpcc7942_0854at 851.399 kb on + strand, within Synpcc7942_0854at 851.399 kb on + strand, within Synpcc7942_0854at 851.399 kb on + strand, within Synpcc7942_0854at 851.399 kb on + strand, within Synpcc7942_0854at 851.399 kb on + strand, within Synpcc7942_0854at 851.409 kb on + strand, within Synpcc7942_0854at 851.409 kb on + strand, within Synpcc7942_0854at 851.418 kb on - strand, within Synpcc7942_0854at 851.443 kb on - strand, within Synpcc7942_0854at 851.445 kb on + strand, within Synpcc7942_0854at 851.481 kb on + strand, within Synpcc7942_0854at 851.489 kb on - strand, within Synpcc7942_0854at 851.489 kb on - strand, within Synpcc7942_0854at 851.491 kb on + strand, within Synpcc7942_0854at 851.491 kb on + strand, within Synpcc7942_0854at 851.496 kb on + strand, within Synpcc7942_0854at 851.507 kb on + strand, within Synpcc7942_0854at 851.513 kb on - strand, within Synpcc7942_0854at 851.515 kb on - strand, within Synpcc7942_0854at 851.558 kb on - strand, within Synpcc7942_0854at 851.560 kb on + strand, within Synpcc7942_0854at 851.560 kb on + strand, within Synpcc7942_0854at 851.568 kb on - strand, within Synpcc7942_0854at 851.621 kb on - strand, within Synpcc7942_0854at 851.652 kb on - strand, within Synpcc7942_0854at 851.700 kb on + strand, within Synpcc7942_0854at 851.708 kb on - strand, within Synpcc7942_0854at 851.716 kb on + strand, within Synpcc7942_0854at 851.735 kb on - strand, within Synpcc7942_0854at 851.779 kb on - strand, within Synpcc7942_0854at 851.780 kb on - strand, within Synpcc7942_0854at 851.807 kb on + strand, within Synpcc7942_0854at 851.815 kb on - strand, within Synpcc7942_0854at 851.815 kb on - strand, within Synpcc7942_0854at 851.826 kb on - strand, within Synpcc7942_0854at 851.850 kb on - strand, within Synpcc7942_0854at 851.853 kb on + strand, within Synpcc7942_0854at 851.869 kb on - strand, within Synpcc7942_0854at 851.886 kb on - strand, within Synpcc7942_0854at 851.888 kb on + strand, within Synpcc7942_0854at 851.901 kb on - strand, within Synpcc7942_0854at 851.902 kb on + strand, within Synpcc7942_0854at 851.907 kb on + strand, within Synpcc7942_0854at 851.915 kb on - strand, within Synpcc7942_0854at 851.925 kb on - strand, within Synpcc7942_0854at 851.941 kb on - strand, within Synpcc7942_0854at 851.941 kb on - strand, within Synpcc7942_0854at 851.979 kb on + strand, within Synpcc7942_0854at 851.980 kb on + strand, within Synpcc7942_0854at 851.988 kb on - strand, within Synpcc7942_0854at 851.992 kb on + strand, within Synpcc7942_0854at 852.007 kb on + strand, within Synpcc7942_0854at 852.010 kb on - strand, within Synpcc7942_0854at 852.010 kb on - strand, within Synpcc7942_0854at 852.015 kb on + strand, within Synpcc7942_0854at 852.017 kb on + strand, within Synpcc7942_0854at 852.060 kb on + strand, within Synpcc7942_0854at 852.091 kb on - strand, within Synpcc7942_0854at 852.107 kb on - strand, within Synpcc7942_0854at 852.127 kb on + strand, within Synpcc7942_0854at 852.136 kb on - strand, within Synpcc7942_0854at 852.153 kb on - strandat 852.169 kb on + strandat 852.206 kb on + strand, within Synpcc7942_0854at 852.206 kb on + strand, within Synpcc7942_0854at 852.243 kb on + strand, within Synpcc7942_0854at 852.245 kb on + strand, within Synpcc7942_0854at 852.245 kb on + strand, within Synpcc7942_0854at 852.255 kb on + strand, within Synpcc7942_0854at 852.270 kb on + strand, within Synpcc7942_0854at 852.357 kb on + strand, within Synpcc7942_0854at 852.359 kb on + strand, within Synpcc7942_0854at 852.359 kb on + strand, within Synpcc7942_0854at 852.367 kb on - strand, within Synpcc7942_0854at 852.367 kb on - strand, within Synpcc7942_0854at 852.367 kb on - strand, within Synpcc7942_0854at 852.374 kb on - strand, within Synpcc7942_0854at 852.382 kb on - strand, within Synpcc7942_0854at 852.394 kb on + strandat 852.401 kb on - strandat 852.414 kb on + strandat 852.456 kb on - strandat 852.500 kb on - strandat 852.501 kb on - strandat 852.501 kb on - strandat 852.740 kb on + strandat 852.826 kb on + strandat 852.831 kb on + strandat 852.832 kb on - strandat 852.839 kb on - strandat 852.929 kb on - strandat 853.095 kb on - strandat 853.097 kb on + strandat 853.097 kb on + strandat 853.161 kb on - strandat 853.226 kb on - strandat 853.597 kb on + strandat 853.597 kb on + strandat 853.605 kb on - strandat 853.605 kb on - strandat 853.605 kb on - strandat 853.612 kb on + strandat 853.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml
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850,089 + -0.7
850,100 + -0.7
850,108 - -0.7
850,108 - +0.6
850,108 - -0.5
850,108 - +0.2
850,114 - +1.2
850,136 + -1.0
850,146 + +1.3
850,158 + -1.7
850,164 + -0.2
850,214 + +0.2
850,214 + +0.6
850,230 + +0.5
850,230 + -0.3
850,230 + +2.4
850,237 + -0.5
850,237 + -3.7
850,238 - +1.9
850,238 - +1.5
850,243 - +0.5
850,245 - -1.7
850,245 - -3.4
850,245 - -2.5
850,245 - -0.9
850,265 - +1.0
850,270 + -4.6
850,275 + -0.9
850,278 - -3.3
850,292 + -2.7
850,292 + -3.3
850,292 + -5.7
850,300 - -4.0
850,312 + -1.4
850,330 + -0.1
850,331 + -1.1
850,342 + -1.5
850,352 + -4.5
850,428 + -4.1
850,464 + +0.6
850,464 + -2.7
850,496 + Synpcc7942_0854 0.11 -1.7
850,498 + Synpcc7942_0854 0.11 -1.7
850,498 + Synpcc7942_0854 0.11 -1.3
850,498 + Synpcc7942_0854 0.11 -1.7
850,504 - Synpcc7942_0854 0.11 -1.7
850,506 - Synpcc7942_0854 0.11 -3.3
850,526 + Synpcc7942_0854 0.12 -1.7
850,529 - Synpcc7942_0854 0.12 -4.0
850,531 - Synpcc7942_0854 0.12 -2.1
850,547 + Synpcc7942_0854 0.13 -2.3
850,585 + Synpcc7942_0854 0.15 +1.4
850,589 + Synpcc7942_0854 0.15 -1.0
850,593 - Synpcc7942_0854 0.15 -2.1
850,597 - Synpcc7942_0854 0.15 -1.3
850,604 + Synpcc7942_0854 0.15 -0.4
850,617 - Synpcc7942_0854 0.16 -1.7
850,620 + Synpcc7942_0854 0.16 +0.8
850,630 - Synpcc7942_0854 0.17 -1.7
850,640 - Synpcc7942_0854 0.17 -0.7
850,654 + Synpcc7942_0854 0.18 -3.3
850,654 + Synpcc7942_0854 0.18 +0.5
850,664 + Synpcc7942_0854 0.18 -1.3
850,793 + Synpcc7942_0854 0.23 +0.3
850,793 + Synpcc7942_0854 0.23 -2.8
850,839 + Synpcc7942_0854 0.25 -0.5
850,839 + Synpcc7942_0854 0.25 -1.6
850,839 + Synpcc7942_0854 0.25 -4.3
850,839 + Synpcc7942_0854 0.25 -3.3
850,847 - Synpcc7942_0854 0.26 -4.3
850,847 - Synpcc7942_0854 0.26 -1.7
850,847 - Synpcc7942_0854 0.26 +0.3
850,847 - Synpcc7942_0854 0.26 -0.7
850,847 - Synpcc7942_0854 0.26 -1.7
850,862 + Synpcc7942_0854 0.26 -1.4
850,866 - Synpcc7942_0854 0.26 -3.1
850,870 + Synpcc7942_0854 0.27 -0.7
850,899 + Synpcc7942_0854 0.28 -0.4
850,906 + Synpcc7942_0854 0.28 -4.0
850,913 - Synpcc7942_0854 0.28 -1.7
850,945 + Synpcc7942_0854 0.30 -1.7
850,978 + Synpcc7942_0854 0.31 -2.7
850,982 + Synpcc7942_0854 0.31 -1.3
850,984 - Synpcc7942_0854 0.31 -3.3
850,986 - Synpcc7942_0854 0.31 -2.4
851,059 + Synpcc7942_0854 0.34 +0.3
851,060 - Synpcc7942_0854 0.35 -0.7
851,064 + Synpcc7942_0854 0.35 -3.7
851,103 - Synpcc7942_0854 0.36 +0.1
851,129 - Synpcc7942_0854 0.37 -4.7
851,138 - Synpcc7942_0854 0.38 +0.2
851,148 - Synpcc7942_0854 0.38 -0.1
851,152 + Synpcc7942_0854 0.38 +0.4
851,152 + Synpcc7942_0854 0.38 -2.4
851,152 + Synpcc7942_0854 0.38 -3.7
851,152 + Synpcc7942_0854 0.38 -2.3
851,201 - Synpcc7942_0854 0.40 -2.8
851,228 + Synpcc7942_0854 0.42 -3.7
851,235 - Synpcc7942_0854 0.42 +0.5
851,248 + Synpcc7942_0854 0.42 -3.3
851,248 + Synpcc7942_0854 0.42 -3.3
851,280 - Synpcc7942_0854 0.44 -3.5
851,280 - Synpcc7942_0854 0.44 -3.3
851,301 + Synpcc7942_0854 0.45 -0.9
851,301 + Synpcc7942_0854 0.45 -1.4
851,330 + Synpcc7942_0854 0.46 -0.1
851,338 - Synpcc7942_0854 0.46 -1.9
851,365 + Synpcc7942_0854 0.47 -1.7
851,383 - Synpcc7942_0854 0.48 +1.1
851,389 + Synpcc7942_0854 0.48 -1.7
851,399 + Synpcc7942_0854 0.49 -2.7
851,399 + Synpcc7942_0854 0.49 -0.2
851,399 + Synpcc7942_0854 0.49 -0.3
851,399 + Synpcc7942_0854 0.49 -1.7
851,399 + Synpcc7942_0854 0.49 -4.0
851,409 + Synpcc7942_0854 0.49 -3.7
851,409 + Synpcc7942_0854 0.49 -1.4
851,418 - Synpcc7942_0854 0.49 -0.9
851,443 - Synpcc7942_0854 0.50 -2.7
851,445 + Synpcc7942_0854 0.51 -1.2
851,481 + Synpcc7942_0854 0.52 -1.7
851,489 - Synpcc7942_0854 0.52 -1.7
851,489 - Synpcc7942_0854 0.52 -1.7
851,491 + Synpcc7942_0854 0.52 -4.7
851,491 + Synpcc7942_0854 0.52 -2.7
851,496 + Synpcc7942_0854 0.53 -2.3
851,507 + Synpcc7942_0854 0.53 -1.8
851,513 - Synpcc7942_0854 0.53 -4.0
851,515 - Synpcc7942_0854 0.53 -2.5
851,558 - Synpcc7942_0854 0.55 -3.3
851,560 + Synpcc7942_0854 0.55 -3.4
851,560 + Synpcc7942_0854 0.55 -4.7
851,568 - Synpcc7942_0854 0.56 -0.7
851,621 - Synpcc7942_0854 0.58 -2.7
851,652 - Synpcc7942_0854 0.59 -0.5
851,700 + Synpcc7942_0854 0.61 -1.4
851,708 - Synpcc7942_0854 0.62 -3.1
851,716 + Synpcc7942_0854 0.62 -4.7
851,735 - Synpcc7942_0854 0.63 -0.7
851,779 - Synpcc7942_0854 0.64 -1.4
851,780 - Synpcc7942_0854 0.65 -4.5
851,807 + Synpcc7942_0854 0.66 -3.3
851,815 - Synpcc7942_0854 0.66 -0.4
851,815 - Synpcc7942_0854 0.66 -3.0
851,826 - Synpcc7942_0854 0.66 -0.8
851,850 - Synpcc7942_0854 0.67 -2.7
851,853 + Synpcc7942_0854 0.68 -1.7
851,869 - Synpcc7942_0854 0.68 -0.7
851,886 - Synpcc7942_0854 0.69 -1.6
851,888 + Synpcc7942_0854 0.69 -0.9
851,901 - Synpcc7942_0854 0.70 -1.9
851,902 + Synpcc7942_0854 0.70 -2.7
851,907 + Synpcc7942_0854 0.70 -3.3
851,915 - Synpcc7942_0854 0.70 -2.7
851,925 - Synpcc7942_0854 0.71 -2.3
851,941 - Synpcc7942_0854 0.71 -2.0
851,941 - Synpcc7942_0854 0.71 -3.7
851,979 + Synpcc7942_0854 0.73 +0.6
851,980 + Synpcc7942_0854 0.73 -3.7
851,988 - Synpcc7942_0854 0.73 -1.7
851,992 + Synpcc7942_0854 0.73 -1.1
852,007 + Synpcc7942_0854 0.74 -1.7
852,010 - Synpcc7942_0854 0.74 -2.7
852,010 - Synpcc7942_0854 0.74 -2.7
852,015 + Synpcc7942_0854 0.74 -1.7
852,017 + Synpcc7942_0854 0.74 -4.3
852,060 + Synpcc7942_0854 0.76 -3.3
852,091 - Synpcc7942_0854 0.78 -3.1
852,107 - Synpcc7942_0854 0.78 -2.4
852,127 + Synpcc7942_0854 0.79 -2.7
852,136 - Synpcc7942_0854 0.79 -1.2
852,153 - -1.7
852,169 + -1.7
852,206 + Synpcc7942_0854 0.82 -1.2
852,206 + Synpcc7942_0854 0.82 -3.4
852,243 + Synpcc7942_0854 0.84 -0.7
852,245 + Synpcc7942_0854 0.84 -4.5
852,245 + Synpcc7942_0854 0.84 -2.7
852,255 + Synpcc7942_0854 0.84 -4.5
852,270 + Synpcc7942_0854 0.85 -3.7
852,357 + Synpcc7942_0854 0.89 -2.3
852,359 + Synpcc7942_0854 0.89 -1.7
852,359 + Synpcc7942_0854 0.89 -1.1
852,367 - Synpcc7942_0854 0.89 -4.3
852,367 - Synpcc7942_0854 0.89 -1.3
852,367 - Synpcc7942_0854 0.89 -2.3
852,374 - Synpcc7942_0854 0.89 -1.4
852,382 - Synpcc7942_0854 0.90 -0.9
852,394 + -2.7
852,401 - -4.5
852,414 + +0.3
852,456 - -2.6
852,500 - -2.3
852,501 - -3.7
852,501 - -1.8
852,740 + +0.1
852,826 + +2.5
852,831 + +0.6
852,832 - -1.1
852,839 - +1.6
852,929 - -0.2
853,095 - +0.1
853,097 + +0.2
853,097 + +1.1
853,161 - +0.5
853,226 - -1.1
853,597 + +0.6
853,597 + -0.4
853,605 - +0.3
853,605 - +1.9
853,605 - +1.9
853,612 + -1.1
853,619 - +1.6

Or see this region's nucleotide sequence