Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4842 and Psyr_4843 are separated by 21 nucleotides Psyr_4843 and Psyr_4844 are separated by 142 nucleotides Psyr_4844 and Psyr_4845 are separated by 13 nucleotides
Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000
_4842
Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501
_4843
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Psyr_4845: Psyr_4845 - conserved hypothetical protein, at 5,751,314 to 5,751,742
_4845
Position (kb) 5750
5751 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5749.057 kb on + strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.111 kb on + strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.708 kb on + strand, within Psyr_4842 at 5749.879 kb on + strand at 5749.880 kb on - strand at 5749.928 kb on + strand at 5749.965 kb on - strand at 5749.965 kb on - strand at 5749.991 kb on + strand at 5749.992 kb on - strand at 5750.035 kb on - strand at 5750.117 kb on - strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.474 kb on + strand at 5750.474 kb on + strand at 5750.569 kb on + strand at 5750.569 kb on + strand at 5750.570 kb on - strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.625 kb on + strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.637 kb on + strand at 5750.638 kb on - strand at 5750.643 kb on + strand at 5750.657 kb on + strand at 5750.658 kb on - strand at 5750.658 kb on - strand at 5750.713 kb on + strand, within Psyr_4844 at 5750.713 kb on + strand, within Psyr_4844 at 5750.750 kb on - strand, within Psyr_4844 at 5750.773 kb on + strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.782 kb on + strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.243 kb on + strand at 5751.285 kb on + strand at 5751.285 kb on + strand at 5751.286 kb on - strand at 5751.311 kb on + strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.474 kb on + strand at 5751.475 kb on - strand, within Psyr_4845 at 5751.475 kb on - strand, within Psyr_4845
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,749,057 + Psyr_4842 0.59 -2.8 5,749,058 - Psyr_4842 0.59 +3.9 5,749,058 - Psyr_4842 0.59 +0.3 5,749,111 + Psyr_4842 0.61 +4.0 5,749,112 - Psyr_4842 0.61 -1.1 5,749,112 - Psyr_4842 0.61 -1.8 5,749,112 - Psyr_4842 0.61 +4.0 5,749,112 - Psyr_4842 0.61 +4.2 5,749,112 - Psyr_4842 0.61 -0.1 5,749,112 - Psyr_4842 0.61 -1.2 5,749,246 + Psyr_4842 0.67 -1.0 5,749,246 + Psyr_4842 0.67 -0.2 5,749,247 - Psyr_4842 0.67 +1.5 5,749,247 - Psyr_4842 0.67 +0.7 5,749,630 - Psyr_4842 0.84 +0.9 5,749,630 - Psyr_4842 0.84 -0.2 5,749,708 + Psyr_4842 0.87 -1.5 5,749,879 + -2.8 5,749,880 - +2.2 5,749,928 + +0.4 5,749,965 - -0.7 5,749,965 - -0.9 5,749,991 + +3.0 5,749,992 - +0.6 5,750,035 - +2.2 5,750,117 - Psyr_4843 0.20 -0.0 5,750,301 + Psyr_4843 0.58 -2.9 5,750,301 + Psyr_4843 0.58 -2.1 5,750,301 + Psyr_4843 0.58 -1.4 5,750,301 + Psyr_4843 0.58 +2.2 5,750,301 + Psyr_4843 0.58 -0.5 5,750,301 + Psyr_4843 0.58 -4.5 5,750,301 + Psyr_4843 0.58 -1.0 5,750,301 + Psyr_4843 0.58 +1.8 5,750,301 + Psyr_4843 0.58 -2.2 5,750,301 + Psyr_4843 0.58 +2.2 5,750,301 + Psyr_4843 0.58 -3.0 5,750,301 + Psyr_4843 0.58 -2.6 5,750,302 - Psyr_4843 0.58 +1.2 5,750,302 - Psyr_4843 0.58 -0.8 5,750,302 - Psyr_4843 0.58 -1.9 5,750,462 + -3.8 5,750,462 + -1.1 5,750,462 + -2.0 5,750,462 + -1.4 5,750,474 + -1.0 5,750,474 + -3.6 5,750,569 + -2.2 5,750,569 + -0.0 5,750,570 - +1.2 5,750,577 + -0.8 5,750,577 + -0.3 5,750,577 + +0.5 5,750,577 + -1.2 5,750,577 + +1.0 5,750,577 + -3.0 5,750,577 + +3.2 5,750,577 + +0.9 5,750,577 + +0.8 5,750,578 - -2.5 5,750,578 - +1.2 5,750,578 - -2.7 5,750,578 - +1.2 5,750,578 - +1.4 5,750,625 + +2.8 5,750,626 - -0.7 5,750,626 - -1.1 5,750,626 - +2.5 5,750,626 - +3.0 5,750,637 + -0.3 5,750,638 - +0.4 5,750,643 + -1.3 5,750,657 + -1.9 5,750,658 - -4.0 5,750,658 - +3.4 5,750,713 + Psyr_4844 0.11 +0.9 5,750,713 + Psyr_4844 0.11 +0.2 5,750,750 - Psyr_4844 0.16 +1.8 5,750,773 + Psyr_4844 0.20 -5.1 5,750,774 - Psyr_4844 0.20 +3.4 5,750,774 - Psyr_4844 0.20 -0.8 5,750,782 + Psyr_4844 0.21 -0.1 5,750,783 - Psyr_4844 0.21 +1.1 5,750,783 - Psyr_4844 0.21 -3.3 5,751,003 + Psyr_4844 0.55 +2.5 5,751,003 + Psyr_4844 0.55 +0.8 5,751,003 + Psyr_4844 0.55 -2.3 5,751,003 + Psyr_4844 0.55 -1.3 5,751,003 + Psyr_4844 0.55 +0.3 5,751,003 + Psyr_4844 0.55 +1.8 5,751,004 - Psyr_4844 0.55 +0.6 5,751,004 - Psyr_4844 0.55 +3.0 5,751,004 - Psyr_4844 0.55 -1.8 5,751,166 + Psyr_4844 0.79 -1.4 5,751,166 + Psyr_4844 0.79 -0.5 5,751,166 + Psyr_4844 0.79 -1.7 5,751,166 + Psyr_4844 0.79 +0.7 5,751,166 + Psyr_4844 0.79 +1.2 5,751,166 + Psyr_4844 0.79 -0.9 5,751,166 + Psyr_4844 0.79 +0.1 5,751,166 + Psyr_4844 0.79 -0.7 5,751,166 + Psyr_4844 0.79 -1.8 5,751,166 + Psyr_4844 0.79 +0.1 5,751,167 - Psyr_4844 0.80 -2.6 5,751,167 - Psyr_4844 0.80 -1.1 5,751,167 - Psyr_4844 0.80 -0.8 5,751,167 - Psyr_4844 0.80 +0.4 5,751,167 - Psyr_4844 0.80 -2.0 5,751,167 - Psyr_4844 0.80 -1.1 5,751,167 - Psyr_4844 0.80 +2.5 5,751,167 - Psyr_4844 0.80 +1.8 5,751,167 - Psyr_4844 0.80 -1.3 5,751,167 - Psyr_4844 0.80 +0.2 5,751,167 - Psyr_4844 0.80 -0.3 5,751,167 - Psyr_4844 0.80 +1.8 5,751,243 + +0.2 5,751,285 + -0.3 5,751,285 + +0.2 5,751,286 - +2.5 5,751,311 + -0.1 5,751,312 - -0.1 5,751,312 - +3.4 5,751,312 - -3.8 5,751,474 + +1.2 5,751,475 - Psyr_4845 0.38 -0.3 5,751,475 - Psyr_4845 0.38 +1.7
Or see this region's nucleotide sequence