Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3770

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3769 and Psyr_3770 are separated by 302 nucleotidesPsyr_3770 and Psyr_3771 are separated by 93 nucleotides Psyr_3769: Psyr_3769 - TonB-dependent siderophore receptor, at 4,487,159 to 4,489,333 _3769 Psyr_3770: Psyr_3770 - Propeptide, PepSY amd peptidase M4, at 4,489,636 to 4,489,944 _3770 Psyr_3771: Psyr_3771 - conserved hypothetical protein, at 4,490,038 to 4,491,201 _3771 Position (kb) 4489 4490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4488.678 kb on + strand, within Psyr_3769at 4488.679 kb on - strand, within Psyr_3769at 4488.679 kb on - strand, within Psyr_3769at 4488.679 kb on - strand, within Psyr_3769at 4488.679 kb on - strand, within Psyr_3769at 4488.679 kb on - strand, within Psyr_3769at 4488.766 kb on - strand, within Psyr_3769at 4488.831 kb on + strand, within Psyr_3769at 4488.839 kb on + strand, within Psyr_3769at 4488.840 kb on - strand, within Psyr_3769at 4489.008 kb on + strand, within Psyr_3769at 4489.011 kb on + strand, within Psyr_3769at 4489.012 kb on - strand, within Psyr_3769at 4489.012 kb on - strand, within Psyr_3769at 4489.181 kb on - strandat 4489.182 kb on + strandat 4489.402 kb on + strandat 4489.402 kb on + strandat 4489.402 kb on + strandat 4489.402 kb on + strandat 4489.403 kb on - strandat 4489.403 kb on - strandat 4489.403 kb on - strandat 4489.403 kb on - strandat 4489.431 kb on + strandat 4489.431 kb on + strandat 4489.431 kb on + strandat 4489.450 kb on - strandat 4489.478 kb on - strandat 4489.478 kb on - strandat 4489.478 kb on - strandat 4489.526 kb on + strandat 4489.527 kb on - strandat 4489.527 kb on - strandat 4489.527 kb on - strandat 4489.530 kb on + strandat 4489.541 kb on + strandat 4489.542 kb on - strandat 4489.546 kb on - strandat 4489.732 kb on + strand, within Psyr_3770at 4489.732 kb on + strand, within Psyr_3770at 4489.733 kb on - strand, within Psyr_3770at 4489.733 kb on - strand, within Psyr_3770at 4489.849 kb on + strand, within Psyr_3770at 4489.849 kb on + strand, within Psyr_3770at 4489.849 kb on + strand, within Psyr_3770at 4489.850 kb on - strand, within Psyr_3770at 4489.891 kb on + strand, within Psyr_3770at 4489.891 kb on + strand, within Psyr_3770at 4489.891 kb on + strand, within Psyr_3770at 4489.892 kb on - strand, within Psyr_3770at 4489.892 kb on - strand, within Psyr_3770at 4489.922 kb on + strandat 4489.922 kb on + strandat 4489.922 kb on + strandat 4489.923 kb on - strandat 4489.923 kb on - strandat 4489.923 kb on - strandat 4489.999 kb on + strandat 4490.000 kb on - strandat 4490.000 kb on - strandat 4490.000 kb on - strandat 4490.053 kb on + strandat 4490.093 kb on + strandat 4490.093 kb on + strandat 4490.093 kb on + strandat 4490.093 kb on + strandat 4490.094 kb on - strandat 4490.094 kb on - strandat 4490.100 kb on - strandat 4490.128 kb on + strandat 4490.129 kb on - strandat 4490.129 kb on - strandat 4490.129 kb on - strandat 4490.230 kb on + strand, within Psyr_3771at 4490.230 kb on + strand, within Psyr_3771at 4490.230 kb on + strand, within Psyr_3771at 4490.230 kb on + strand, within Psyr_3771at 4490.230 kb on + strand, within Psyr_3771at 4490.231 kb on - strand, within Psyr_3771at 4490.231 kb on - strand, within Psyr_3771at 4490.231 kb on - strand, within Psyr_3771at 4490.231 kb on - strand, within Psyr_3771at 4490.231 kb on - strand, within Psyr_3771at 4490.267 kb on + strand, within Psyr_3771at 4490.267 kb on + strand, within Psyr_3771at 4490.267 kb on + strand, within Psyr_3771at 4490.267 kb on + strand, within Psyr_3771at 4490.267 kb on + strand, within Psyr_3771at 4490.268 kb on - strand, within Psyr_3771at 4490.268 kb on - strand, within Psyr_3771at 4490.268 kb on - strand, within Psyr_3771at 4490.268 kb on - strand, within Psyr_3771at 4490.268 kb on - strand, within Psyr_3771at 4490.372 kb on + strand, within Psyr_3771at 4490.405 kb on + strand, within Psyr_3771at 4490.428 kb on - strand, within Psyr_3771at 4490.523 kb on - strand, within Psyr_3771at 4490.523 kb on - strandat 4490.523 kb on - strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.530 kb on + strand, within Psyr_3771at 4490.531 kb on - strand, within Psyr_3771at 4490.531 kb on - strand, within Psyr_3771at 4490.859 kb on - strand, within Psyr_3771at 4490.859 kb on - strand, within Psyr_3771at 4490.868 kb on - strand, within Psyr_3771at 4490.868 kb on - strand, within Psyr_3771at 4490.868 kb on - strand, within Psyr_3771at 4490.868 kb on - strand, within Psyr_3771at 4490.868 kb on - strand, within Psyr_3771

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,488,678 + Psyr_3769 0.70 -0.9
4,488,679 - Psyr_3769 0.70 -1.1
4,488,679 - Psyr_3769 0.70 +2.5
4,488,679 - Psyr_3769 0.70 +1.5
4,488,679 - Psyr_3769 0.70 +4.2
4,488,679 - Psyr_3769 0.70 +4.7
4,488,766 - Psyr_3769 0.74 +3.0
4,488,831 + Psyr_3769 0.77 +2.0
4,488,839 + Psyr_3769 0.77 -0.3
4,488,840 - Psyr_3769 0.77 -0.8
4,489,008 + Psyr_3769 0.85 -0.0
4,489,011 + Psyr_3769 0.85 +0.5
4,489,012 - Psyr_3769 0.85 +0.1
4,489,012 - Psyr_3769 0.85 +0.0
4,489,181 - +3.4
4,489,182 + -0.9
4,489,402 + +2.3
4,489,402 + +0.7
4,489,402 + -0.7
4,489,402 + -1.5
4,489,403 - +1.0
4,489,403 - -4.7
4,489,403 - +3.1
4,489,403 - -3.4
4,489,431 + +1.5
4,489,431 + -0.2
4,489,431 + -1.5
4,489,450 - -0.3
4,489,478 - -0.6
4,489,478 - +0.5
4,489,478 - +1.4
4,489,526 + -1.4
4,489,527 - -2.2
4,489,527 - -0.8
4,489,527 - -1.0
4,489,530 + -1.3
4,489,541 + -2.4
4,489,542 - +2.5
4,489,546 - +0.6
4,489,732 + Psyr_3770 0.31 +1.5
4,489,732 + Psyr_3770 0.31 +1.1
4,489,733 - Psyr_3770 0.31 -0.4
4,489,733 - Psyr_3770 0.31 +2.5
4,489,849 + Psyr_3770 0.69 -0.7
4,489,849 + Psyr_3770 0.69 +0.6
4,489,849 + Psyr_3770 0.69 +5.0
4,489,850 - Psyr_3770 0.69 +2.0
4,489,891 + Psyr_3770 0.83 +2.8
4,489,891 + Psyr_3770 0.83 +0.3
4,489,891 + Psyr_3770 0.83 +0.2
4,489,892 - Psyr_3770 0.83 +2.0
4,489,892 - Psyr_3770 0.83 +2.0
4,489,922 + -0.5
4,489,922 + +4.2
4,489,922 + +4.0
4,489,923 - -0.7
4,489,923 - -0.6
4,489,923 - -4.6
4,489,999 + -0.9
4,490,000 - -0.6
4,490,000 - -0.7
4,490,000 - +3.9
4,490,053 + -0.4
4,490,093 + +3.5
4,490,093 + +0.7
4,490,093 + +1.0
4,490,093 + -0.9
4,490,094 - +0.6
4,490,094 - +3.9
4,490,100 - +3.1
4,490,128 + -1.3
4,490,129 - +0.8
4,490,129 - -1.5
4,490,129 - -1.8
4,490,230 + Psyr_3771 0.16 -0.1
4,490,230 + Psyr_3771 0.16 -0.0
4,490,230 + Psyr_3771 0.16 -0.4
4,490,230 + Psyr_3771 0.16 -1.8
4,490,230 + Psyr_3771 0.16 -2.1
4,490,231 - Psyr_3771 0.17 -0.5
4,490,231 - Psyr_3771 0.17 +3.7
4,490,231 - Psyr_3771 0.17 -2.4
4,490,231 - Psyr_3771 0.17 -1.2
4,490,231 - Psyr_3771 0.17 -0.6
4,490,267 + Psyr_3771 0.20 -2.9
4,490,267 + Psyr_3771 0.20 -0.5
4,490,267 + Psyr_3771 0.20 -3.9
4,490,267 + Psyr_3771 0.20 -0.8
4,490,267 + Psyr_3771 0.20 +0.4
4,490,268 - Psyr_3771 0.20 +2.5
4,490,268 - Psyr_3771 0.20 -1.2
4,490,268 - Psyr_3771 0.20 -2.3
4,490,268 - Psyr_3771 0.20 -0.2
4,490,268 - Psyr_3771 0.20 +0.0
4,490,372 + Psyr_3771 0.29 +0.9
4,490,405 + Psyr_3771 0.32 -2.5
4,490,428 - Psyr_3771 0.34 -0.4
4,490,523 - Psyr_3771 0.42 -1.2
4,490,523 - +2.3
4,490,523 - Psyr_3771 0.42 +1.5
4,490,530 + Psyr_3771 0.42 +0.5
4,490,530 + Psyr_3771 0.42 -1.0
4,490,530 + Psyr_3771 0.42 +2.8
4,490,530 + Psyr_3771 0.42 -2.8
4,490,530 + Psyr_3771 0.42 -0.2
4,490,530 + Psyr_3771 0.42 -0.7
4,490,531 - Psyr_3771 0.42 +0.8
4,490,531 - Psyr_3771 0.42 -2.4
4,490,859 - Psyr_3771 0.71 -0.2
4,490,859 - Psyr_3771 0.71 -0.7
4,490,868 - Psyr_3771 0.71 -1.7
4,490,868 - Psyr_3771 0.71 -0.8
4,490,868 - Psyr_3771 0.71 +1.0
4,490,868 - Psyr_3771 0.71 +3.5
4,490,868 - Psyr_3771 0.71 -1.4

Or see this region's nucleotide sequence