Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3605 and Psyr_3606 are separated by 38 nucleotides Psyr_3606 and Psyr_3607 are separated by 138 nucleotides
Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349
_3605
Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359
_3606
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Position (kb) 4289
4290
4291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4288.401 kb on - strand, within Psyr_3605 at 4288.533 kb on - strand, within Psyr_3605 at 4288.550 kb on + strand, within Psyr_3605 at 4288.561 kb on - strand, within Psyr_3605 at 4288.636 kb on - strand, within Psyr_3605 at 4288.669 kb on - strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.935 kb on - strand, within Psyr_3605 at 4288.955 kb on + strand, within Psyr_3605 at 4288.972 kb on - strand, within Psyr_3605 at 4289.046 kb on + strand, within Psyr_3605 at 4289.221 kb on - strand at 4289.221 kb on - strand at 4289.394 kb on + strand at 4289.394 kb on + strand at 4289.806 kb on + strand, within Psyr_3606 at 4289.806 kb on + strand, within Psyr_3606 at 4289.807 kb on - strand, within Psyr_3606 at 4289.820 kb on - strand, within Psyr_3606 at 4290.126 kb on - strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.201 kb on + strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.248 kb on - strand, within Psyr_3606 at 4290.363 kb on + strand at 4290.363 kb on + strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.697 kb on + strand, within Psyr_3607 at 4290.697 kb on + strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.747 kb on - strand, within Psyr_3607 at 4290.759 kb on - strand, within Psyr_3607 at 4290.896 kb on - strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4291.044 kb on + strand, within Psyr_3607 at 4291.045 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.213 kb on + strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,288,401 - Psyr_3605 0.58 -1.8 4,288,533 - Psyr_3605 0.64 -1.9 4,288,550 + Psyr_3605 0.65 -0.6 4,288,561 - Psyr_3605 0.65 +3.5 4,288,636 - Psyr_3605 0.69 -1.1 4,288,669 - Psyr_3605 0.70 +2.9 4,288,863 + Psyr_3605 0.79 +1.5 4,288,863 + Psyr_3605 0.79 +0.8 4,288,863 + Psyr_3605 0.79 +3.9 4,288,864 - Psyr_3605 0.79 +1.9 4,288,864 - Psyr_3605 0.79 +0.3 4,288,934 + Psyr_3605 0.82 -0.7 4,288,934 + Psyr_3605 0.82 -0.6 4,288,935 - Psyr_3605 0.82 +3.2 4,288,955 + Psyr_3605 0.83 -2.5 4,288,972 - Psyr_3605 0.83 -0.3 4,289,046 + Psyr_3605 0.87 +2.7 4,289,221 - +3.9 4,289,221 - -2.2 4,289,394 + -0.2 4,289,394 + +2.5 4,289,806 + Psyr_3606 0.43 -2.3 4,289,806 + Psyr_3606 0.43 +0.9 4,289,807 - Psyr_3606 0.43 -4.7 4,289,820 - Psyr_3606 0.44 +3.3 4,290,126 - Psyr_3606 0.76 -1.2 4,290,196 + Psyr_3606 0.83 +3.6 4,290,196 + Psyr_3606 0.83 -1.3 4,290,197 - Psyr_3606 0.83 +2.5 4,290,197 - Psyr_3606 0.83 -2.9 4,290,201 + Psyr_3606 0.84 -0.6 4,290,202 - Psyr_3606 0.84 +3.1 4,290,202 - Psyr_3606 0.84 +1.5 4,290,202 - Psyr_3606 0.84 -0.4 4,290,202 - Psyr_3606 0.84 -0.5 4,290,248 - Psyr_3606 0.88 -0.5 4,290,363 + +1.5 4,290,363 + -1.1 4,290,364 - +2.7 4,290,364 - +0.3 4,290,364 - -2.6 4,290,364 - -0.1 4,290,364 - -1.7 4,290,364 - +0.1 4,290,364 - -3.1 4,290,364 - +3.1 4,290,364 - +0.0 4,290,697 + Psyr_3607 0.22 -0.1 4,290,697 + Psyr_3607 0.22 +1.0 4,290,698 - Psyr_3607 0.22 +1.9 4,290,698 - Psyr_3607 0.22 +2.7 4,290,698 - Psyr_3607 0.22 +0.9 4,290,698 - Psyr_3607 0.22 +0.0 4,290,747 - Psyr_3607 0.27 +1.9 4,290,759 - Psyr_3607 0.29 -1.4 4,290,896 - Psyr_3607 0.44 +3.6 4,290,913 + Psyr_3607 0.46 -2.6 4,290,913 + Psyr_3607 0.46 +0.9 4,290,914 - Psyr_3607 0.46 +0.0 4,290,914 - Psyr_3607 0.46 +3.7 4,290,991 + Psyr_3607 0.54 -1.5 4,290,991 + Psyr_3607 0.54 -0.4 4,291,044 + Psyr_3607 0.60 +4.2 4,291,045 - Psyr_3607 0.60 +2.2 4,291,211 - Psyr_3607 0.78 -0.1 4,291,211 - Psyr_3607 0.78 -0.4 4,291,213 + Psyr_3607 0.79 +2.5 4,291,214 - Psyr_3607 0.79 -0.2 4,291,214 - Psyr_3607 0.79 +3.9 4,291,214 - Psyr_3607 0.79 -1.1 4,291,214 - Psyr_3607 0.79 -2.0
Or see this region's nucleotide sequence