Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1676

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1675 and Psyr_1676 are separated by 84 nucleotidesPsyr_1676 and Psyr_1677 are separated by 147 nucleotides Psyr_1675: Psyr_1675 - 2,4-dienoyl-CoA reductase, at 1,882,468 to 1,884,507 _1675 Psyr_1676: Psyr_1676 - 1-aminocyclopropane-1-carboxylate deaminase, putative, at 1,884,592 to 1,885,536 _1676 Psyr_1677: Psyr_1677 - General substrate transporter:Major facilitator superfamily, at 1,885,684 to 1,887,021 _1677 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1883.767 kb on + strand, within Psyr_1675at 1883.767 kb on + strand, within Psyr_1675at 1883.932 kb on + strand, within Psyr_1675at 1883.933 kb on - strand, within Psyr_1675at 1883.933 kb on - strand, within Psyr_1675at 1883.933 kb on - strand, within Psyr_1675at 1883.945 kb on + strand, within Psyr_1675at 1883.945 kb on + strand, within Psyr_1675at 1883.945 kb on + strand, within Psyr_1675at 1883.946 kb on - strand, within Psyr_1675at 1884.088 kb on - strand, within Psyr_1675at 1884.300 kb on + strand, within Psyr_1675at 1884.301 kb on - strand, within Psyr_1675at 1884.350 kb on + strandat 1884.350 kb on + strandat 1884.351 kb on - strandat 1884.351 kb on - strandat 1884.351 kb on - strandat 1884.388 kb on + strandat 1884.388 kb on + strandat 1884.388 kb on + strandat 1884.388 kb on + strandat 1884.388 kb on + strandat 1884.388 kb on + strandat 1884.389 kb on - strandat 1884.389 kb on - strandat 1884.389 kb on - strandat 1884.389 kb on - strandat 1884.944 kb on - strand, within Psyr_1676at 1885.115 kb on - strand, within Psyr_1676at 1885.195 kb on + strand, within Psyr_1676at 1885.308 kb on + strand, within Psyr_1676at 1885.308 kb on + strand, within Psyr_1676at 1885.308 kb on + strand, within Psyr_1676at 1885.309 kb on - strand, within Psyr_1676at 1885.309 kb on - strand, within Psyr_1676at 1885.309 kb on - strand, within Psyr_1676at 1885.309 kb on - strand, within Psyr_1676at 1885.309 kb on - strand, within Psyr_1676at 1885.414 kb on + strand, within Psyr_1676at 1885.415 kb on - strand, within Psyr_1676at 1885.534 kb on + strandat 1885.600 kb on - strandat 1885.692 kb on + strandat 1885.692 kb on + strandat 1885.692 kb on + strandat 1885.693 kb on - strandat 1885.693 kb on - strandat 1885.695 kb on + strandat 1885.696 kb on - strandat 1885.700 kb on + strandat 1885.701 kb on - strandat 1886.011 kb on + strand, within Psyr_1677at 1886.011 kb on + strand, within Psyr_1677at 1886.012 kb on - strand, within Psyr_1677at 1886.012 kb on - strand, within Psyr_1677at 1886.012 kb on - strand, within Psyr_1677at 1886.089 kb on + strand, within Psyr_1677at 1886.089 kb on + strand, within Psyr_1677at 1886.107 kb on + strand, within Psyr_1677at 1886.107 kb on + strand, within Psyr_1677at 1886.107 kb on + strand, within Psyr_1677at 1886.108 kb on - strand, within Psyr_1677at 1886.147 kb on - strand, within Psyr_1677at 1886.199 kb on - strand, within Psyr_1677at 1886.206 kb on + strand, within Psyr_1677at 1886.302 kb on + strand, within Psyr_1677at 1886.455 kb on + strand, within Psyr_1677at 1886.455 kb on + strand, within Psyr_1677at 1886.455 kb on + strand, within Psyr_1677at 1886.455 kb on + strand, within Psyr_1677at 1886.456 kb on - strand, within Psyr_1677at 1886.456 kb on - strand, within Psyr_1677at 1886.456 kb on - strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.470 kb on + strand, within Psyr_1677at 1886.471 kb on - strand, within Psyr_1677at 1886.471 kb on - strand, within Psyr_1677at 1886.471 kb on - strand, within Psyr_1677at 1886.471 kb on - strand, within Psyr_1677at 1886.482 kb on + strand, within Psyr_1677at 1886.483 kb on - strand, within Psyr_1677at 1886.483 kb on - strand, within Psyr_1677

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,883,767 + Psyr_1675 0.64 +3.2
1,883,767 + Psyr_1675 0.64 -2.0
1,883,932 + Psyr_1675 0.72 +3.2
1,883,933 - Psyr_1675 0.72 +4.1
1,883,933 - Psyr_1675 0.72 -1.0
1,883,933 - Psyr_1675 0.72 -0.4
1,883,945 + Psyr_1675 0.72 -0.5
1,883,945 + Psyr_1675 0.72 -1.4
1,883,945 + Psyr_1675 0.72 +1.5
1,883,946 - Psyr_1675 0.72 +0.9
1,884,088 - Psyr_1675 0.79 +2.2
1,884,300 + Psyr_1675 0.90 +1.9
1,884,301 - Psyr_1675 0.90 -1.5
1,884,350 + +2.9
1,884,350 + +1.1
1,884,351 - +0.7
1,884,351 - -0.5
1,884,351 - +2.5
1,884,388 + +0.9
1,884,388 + -0.3
1,884,388 + +2.7
1,884,388 + -2.3
1,884,388 + -3.8
1,884,388 + +2.9
1,884,389 - +0.9
1,884,389 - +3.5
1,884,389 - +2.5
1,884,389 - -0.2
1,884,944 - Psyr_1676 0.37 -0.9
1,885,115 - Psyr_1676 0.55 +3.1
1,885,195 + Psyr_1676 0.64 -1.7
1,885,308 + Psyr_1676 0.76 -0.1
1,885,308 + Psyr_1676 0.76 +2.5
1,885,308 + Psyr_1676 0.76 +3.1
1,885,309 - Psyr_1676 0.76 +0.0
1,885,309 - Psyr_1676 0.76 -3.0
1,885,309 - Psyr_1676 0.76 -1.9
1,885,309 - Psyr_1676 0.76 -4.7
1,885,309 - Psyr_1676 0.76 +2.5
1,885,414 + Psyr_1676 0.87 -0.7
1,885,415 - Psyr_1676 0.87 +0.0
1,885,534 + +2.9
1,885,600 - -2.0
1,885,692 + +0.4
1,885,692 + -0.5
1,885,692 + +3.2
1,885,693 - -1.7
1,885,693 - -2.7
1,885,695 + -0.4
1,885,696 - -1.4
1,885,700 + -0.9
1,885,701 - +0.2
1,886,011 + Psyr_1677 0.24 -1.2
1,886,011 + Psyr_1677 0.24 +3.2
1,886,012 - Psyr_1677 0.25 -1.0
1,886,012 - Psyr_1677 0.25 -0.5
1,886,012 - Psyr_1677 0.25 -1.3
1,886,089 + Psyr_1677 0.30 -2.2
1,886,089 + Psyr_1677 0.30 +2.5
1,886,107 + Psyr_1677 0.32 +1.5
1,886,107 + Psyr_1677 0.32 +1.9
1,886,107 + Psyr_1677 0.32 +3.2
1,886,108 - Psyr_1677 0.32 +2.9
1,886,147 - Psyr_1677 0.35 +0.9
1,886,199 - Psyr_1677 0.38 -0.1
1,886,206 + Psyr_1677 0.39 -2.4
1,886,302 + Psyr_1677 0.46 -0.4
1,886,455 + Psyr_1677 0.58 -1.6
1,886,455 + Psyr_1677 0.58 +0.9
1,886,455 + Psyr_1677 0.58 +3.8
1,886,455 + Psyr_1677 0.58 -1.1
1,886,456 - Psyr_1677 0.58 +0.9
1,886,456 - Psyr_1677 0.58 -1.1
1,886,456 - Psyr_1677 0.58 +3.1
1,886,470 + Psyr_1677 0.59 -3.0
1,886,470 + Psyr_1677 0.59 +3.5
1,886,470 + Psyr_1677 0.59 -1.0
1,886,470 + Psyr_1677 0.59 +3.1
1,886,470 + Psyr_1677 0.59 -1.0
1,886,470 + Psyr_1677 0.59 +0.6
1,886,470 + Psyr_1677 0.59 +4.0
1,886,471 - Psyr_1677 0.59 +0.2
1,886,471 - Psyr_1677 0.59 -1.0
1,886,471 - Psyr_1677 0.59 +4.2
1,886,471 - Psyr_1677 0.59 +0.9
1,886,482 + Psyr_1677 0.60 +2.2
1,886,483 - Psyr_1677 0.60 -1.3
1,886,483 - Psyr_1677 0.60 +1.5

Or see this region's nucleotide sequence