Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1070 and Psyr_1071 are separated by 115 nucleotides Psyr_1071 and Psyr_1072 are separated by 485 nucleotides
Psyr_1070: Psyr_1070 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 1,212,230 to 1,213,687
_1070
Psyr_1071: Psyr_1071 - Carboxylesterase, at 1,213,803 to 1,214,462
_1071
Psyr_1072: Psyr_1072 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,214,948 to 1,215,976
_1072
Position (kb) 1213
1214
1215 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 1212.809 kb on + strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.953 kb on - strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.185 kb on + strand, within Psyr_1070 at 1213.185 kb on + strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.609 kb on + strand at 1213.610 kb on - strand at 1213.667 kb on - strand at 1213.711 kb on - strand at 1213.725 kb on - strand at 1213.725 kb on - strand at 1213.767 kb on + strand at 1213.767 kb on + strand at 1213.768 kb on - strand at 1213.896 kb on + strand, within Psyr_1071 at 1213.897 kb on - strand, within Psyr_1071 at 1214.030 kb on + strand, within Psyr_1071 at 1214.030 kb on + strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.261 kb on - strand, within Psyr_1071 at 1214.272 kb on - strand, within Psyr_1071 at 1214.272 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.380 kb on + strand, within Psyr_1071 at 1214.381 kb on - strand, within Psyr_1071 at 1214.381 kb on - strand, within Psyr_1071 at 1214.411 kb on + strand at 1214.506 kb on + strand at 1214.506 kb on + strand at 1214.507 kb on - strand at 1214.551 kb on + strand at 1214.588 kb on - strand at 1214.588 kb on - strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.666 kb on + strand at 1214.666 kb on + strand at 1214.667 kb on - strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.675 kb on + strand at 1214.736 kb on - strand at 1214.877 kb on + strand at 1214.878 kb on - strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.917 kb on - strand at 1215.110 kb on - strand, within Psyr_1072 at 1215.166 kb on - strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.323 kb on + strand, within Psyr_1072 at 1215.324 kb on - strand, within Psyr_1072 at 1215.324 kb on - strand, within Psyr_1072 at 1215.332 kb on - strand, within Psyr_1072 at 1215.346 kb on - strand, within Psyr_1072 at 1215.346 kb on - strand, within Psyr_1072 at 1215.441 kb on - strand, within Psyr_1072
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,212,809 + Psyr_1070 0.40 +0.3 1,212,810 - Psyr_1070 0.40 +3.6 1,212,810 - Psyr_1070 0.40 -2.7 1,212,810 - Psyr_1070 0.40 +0.5 1,212,887 + Psyr_1070 0.45 +2.6 1,212,887 + Psyr_1070 0.45 +3.4 1,212,887 + Psyr_1070 0.45 +2.6 1,212,953 - Psyr_1070 0.50 +1.6 1,213,098 + Psyr_1070 0.60 +2.6 1,213,098 + Psyr_1070 0.60 -1.1 1,213,098 + Psyr_1070 0.60 -0.0 1,213,099 - Psyr_1070 0.60 -0.0 1,213,099 - Psyr_1070 0.60 -2.8 1,213,099 - Psyr_1070 0.60 +3.2 1,213,185 + Psyr_1070 0.66 -1.1 1,213,185 + Psyr_1070 0.66 +3.0 1,213,186 - Psyr_1070 0.66 -0.4 1,213,186 - Psyr_1070 0.66 -1.0 1,213,186 - Psyr_1070 0.66 +1.0 1,213,609 + -2.4 1,213,610 - +3.0 1,213,667 - -2.8 1,213,711 - -0.0 1,213,725 - -2.0 1,213,725 - -1.2 1,213,767 + -1.6 1,213,767 + +3.1 1,213,768 - +4.1 1,213,896 + Psyr_1071 0.14 -0.4 1,213,897 - Psyr_1071 0.14 -1.7 1,214,030 + Psyr_1071 0.34 +5.4 1,214,030 + Psyr_1071 0.34 -0.0 1,214,031 - Psyr_1071 0.35 +1.6 1,214,031 - Psyr_1071 0.35 -2.3 1,214,031 - Psyr_1071 0.35 -0.3 1,214,038 + Psyr_1071 0.36 +4.0 1,214,038 + Psyr_1071 0.36 -0.0 1,214,038 + Psyr_1071 0.36 +3.0 1,214,038 + Psyr_1071 0.36 +1.0 1,214,039 - Psyr_1071 0.36 +0.4 1,214,039 - Psyr_1071 0.36 +3.1 1,214,039 - Psyr_1071 0.36 -2.0 1,214,039 - Psyr_1071 0.36 +0.2 1,214,039 - Psyr_1071 0.36 +3.0 1,214,039 - Psyr_1071 0.36 +2.8 1,214,261 - Psyr_1071 0.69 +3.4 1,214,272 - Psyr_1071 0.71 +0.2 1,214,272 - Psyr_1071 0.71 -1.2 1,214,323 - Psyr_1071 0.79 +3.1 1,214,323 - Psyr_1071 0.79 +3.6 1,214,323 - Psyr_1071 0.79 +1.6 1,214,380 + Psyr_1071 0.87 +4.6 1,214,381 - Psyr_1071 0.88 -1.6 1,214,381 - Psyr_1071 0.88 -0.6 1,214,411 + -0.8 1,214,506 + -1.3 1,214,506 + +1.7 1,214,507 - -0.5 1,214,551 + +0.6 1,214,588 - -0.5 1,214,588 - -1.5 1,214,658 + +3.4 1,214,658 + -0.6 1,214,658 + +0.7 1,214,658 + +0.7 1,214,658 + -0.8 1,214,658 + +4.1 1,214,658 + -2.2 1,214,658 + +1.0 1,214,658 + -0.4 1,214,658 + -0.8 1,214,659 - -0.8 1,214,659 - -0.7 1,214,659 - +1.6 1,214,659 - +1.3 1,214,659 - +2.0 1,214,659 - -1.4 1,214,659 - -2.1 1,214,659 - -0.4 1,214,659 - +3.0 1,214,660 + +3.7 1,214,660 + +0.1 1,214,660 + +2.8 1,214,660 + -1.5 1,214,661 - +1.6 1,214,661 - -1.2 1,214,661 - +1.3 1,214,661 - -3.3 1,214,666 + +3.7 1,214,666 + +0.0 1,214,667 - -1.0 1,214,669 + -1.1 1,214,669 + +4.6 1,214,669 + -1.8 1,214,669 + +2.8 1,214,669 + +2.3 1,214,669 + -1.4 1,214,669 + -0.2 1,214,669 + -0.9 1,214,670 - +4.1 1,214,670 - +0.9 1,214,670 - +1.6 1,214,670 - +1.0 1,214,670 - -0.7 1,214,670 - -1.7 1,214,670 - -4.3 1,214,670 - -0.0 1,214,673 + +1.6 1,214,673 + -1.9 1,214,673 + -1.1 1,214,673 + -4.0 1,214,673 + -1.7 1,214,673 + +3.3 1,214,673 + +2.0 1,214,673 + -0.9 1,214,674 - +1.0 1,214,674 - +3.9 1,214,674 - +3.7 1,214,674 - +2.0 1,214,675 + +4.6 1,214,736 - -2.1 1,214,877 + +1.0 1,214,878 - +3.2 1,214,916 + -3.6 1,214,916 + +0.9 1,214,916 + +4.6 1,214,916 + -1.1 1,214,916 + +0.7 1,214,917 - +0.7 1,215,110 - Psyr_1072 0.16 +2.6 1,215,166 - Psyr_1072 0.21 -1.5 1,215,320 + Psyr_1072 0.36 -0.0 1,215,320 + Psyr_1072 0.36 -4.8 1,215,320 + Psyr_1072 0.36 +2.6 1,215,320 + Psyr_1072 0.36 +1.6 1,215,320 + Psyr_1072 0.36 -0.6 1,215,320 + Psyr_1072 0.36 +0.3 1,215,323 + Psyr_1072 0.36 +0.2 1,215,324 - Psyr_1072 0.37 +2.6 1,215,324 - Psyr_1072 0.37 +2.3 1,215,332 - Psyr_1072 0.37 +4.6 1,215,346 - Psyr_1072 0.39 -1.8 1,215,346 - Psyr_1072 0.39 -0.0 1,215,441 - Psyr_1072 0.48 +1.6
Or see this region's nucleotide sequence