Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0079 and Psyr_0080 overlap by 8 nucleotides Psyr_0080 and Psyr_0081 are separated by 200 nucleotides
Psyr_0079: Psyr_0079 - conserved hypothetical protein, at 85,222 to 86,475
_0079
Psyr_0080: Psyr_0080 - Protein of unknown function DUF81, at 86,468 to 87,280
_0080
Psyr_0081: Psyr_0081 - ABC transporter, at 87,481 to 88,461
_0081
Position (kb) 86
87
88 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 85.621 kb on + strand, within Psyr_0079 at 85.643 kb on - strand, within Psyr_0079 at 85.690 kb on - strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.741 kb on + strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.742 kb on - strand, within Psyr_0079 at 85.801 kb on + strand, within Psyr_0079 at 85.801 kb on + strand, within Psyr_0079 at 85.801 kb on + strand, within Psyr_0079 at 85.801 kb on + strand, within Psyr_0079 at 85.802 kb on - strand, within Psyr_0079 at 85.802 kb on - strand, within Psyr_0079 at 85.802 kb on - strand, within Psyr_0079 at 85.802 kb on - strand, within Psyr_0079 at 85.802 kb on - strand, within Psyr_0079 at 85.837 kb on + strand, within Psyr_0079 at 85.837 kb on + strand, within Psyr_0079 at 85.837 kb on + strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.838 kb on - strand, within Psyr_0079 at 85.858 kb on + strand, within Psyr_0079 at 85.858 kb on + strand, within Psyr_0079 at 85.858 kb on + strand, within Psyr_0079 at 85.858 kb on + strand, within Psyr_0079 at 85.858 kb on + strand, within Psyr_0079 at 85.859 kb on - strand, within Psyr_0079 at 85.859 kb on - strand, within Psyr_0079 at 85.859 kb on - strand, within Psyr_0079 at 85.859 kb on - strand, within Psyr_0079 at 86.000 kb on + strand, within Psyr_0079 at 86.001 kb on - strand, within Psyr_0079 at 86.001 kb on - strand, within Psyr_0079 at 86.001 kb on - strand, within Psyr_0079 at 86.198 kb on + strand, within Psyr_0079 at 86.198 kb on + strand, within Psyr_0079 at 86.199 kb on - strand, within Psyr_0079 at 86.199 kb on - strand, within Psyr_0079 at 86.199 kb on - strand, within Psyr_0079 at 86.199 kb on - strand, within Psyr_0079 at 86.199 kb on - strand, within Psyr_0079 at 86.236 kb on + strand, within Psyr_0079 at 86.236 kb on + strand, within Psyr_0079 at 86.236 kb on + strand, within Psyr_0079 at 86.236 kb on + strand, within Psyr_0079 at 86.236 kb on + strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.237 kb on - strand, within Psyr_0079 at 86.302 kb on + strand, within Psyr_0079 at 86.303 kb on - strand, within Psyr_0079 at 86.303 kb on - strand, within Psyr_0079 at 86.303 kb on - strand, within Psyr_0079 at 86.303 kb on - strand, within Psyr_0079 at 86.404 kb on + strand at 86.520 kb on + strand at 86.697 kb on - strand, within Psyr_0080 at 86.697 kb on - strand, within Psyr_0080 at 86.697 kb on - strand, within Psyr_0080 at 86.715 kb on + strand, within Psyr_0080 at 86.715 kb on + strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.798 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 87.121 kb on + strand, within Psyr_0080 at 87.121 kb on + strand, within Psyr_0080 at 87.122 kb on - strand, within Psyr_0080 at 87.341 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.459 kb on - strand at 87.483 kb on - strand at 87.483 kb on - strand at 87.788 kb on + strand, within Psyr_0081 at 87.789 kb on - strand, within Psyr_0081
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 85,621 + Psyr_0079 0.32 -2.1 85,643 - Psyr_0079 0.34 +0.7 85,690 - Psyr_0079 0.37 -0.0 85,741 + Psyr_0079 0.41 -1.7 85,741 + Psyr_0079 0.41 -0.1 85,741 + Psyr_0079 0.41 +0.0 85,741 + Psyr_0079 0.41 +3.6 85,741 + Psyr_0079 0.41 -0.2 85,741 + Psyr_0079 0.41 +3.0 85,741 + Psyr_0079 0.41 +0.4 85,741 + Psyr_0079 0.41 -0.3 85,741 + Psyr_0079 0.41 +2.3 85,741 + Psyr_0079 0.41 +2.5 85,741 + Psyr_0079 0.41 -0.0 85,741 + Psyr_0079 0.41 -0.6 85,741 + Psyr_0079 0.41 +3.7 85,741 + Psyr_0079 0.41 +2.7 85,741 + Psyr_0079 0.41 +3.7 85,741 + Psyr_0079 0.41 +0.1 85,741 + Psyr_0079 0.41 +3.6 85,741 + Psyr_0079 0.41 +0.1 85,742 - Psyr_0079 0.41 -3.3 85,742 - Psyr_0079 0.41 -0.8 85,742 - Psyr_0079 0.41 +3.0 85,742 - Psyr_0079 0.41 -1.5 85,742 - Psyr_0079 0.41 -3.8 85,742 - Psyr_0079 0.41 +2.2 85,742 - Psyr_0079 0.41 +2.7 85,742 - Psyr_0079 0.41 -3.1 85,742 - Psyr_0079 0.41 -1.2 85,742 - Psyr_0079 0.41 -1.1 85,742 - Psyr_0079 0.41 +3.0 85,742 - Psyr_0079 0.41 -1.1 85,742 - Psyr_0079 0.41 +1.7 85,742 - Psyr_0079 0.41 -0.1 85,742 - Psyr_0079 0.41 +4.9 85,742 - Psyr_0079 0.41 -1.5 85,742 - Psyr_0079 0.41 +4.4 85,801 + Psyr_0079 0.46 +0.4 85,801 + Psyr_0079 0.46 -0.7 85,801 + Psyr_0079 0.46 +0.2 85,801 + Psyr_0079 0.46 -0.4 85,802 - Psyr_0079 0.46 +2.0 85,802 - Psyr_0079 0.46 +2.2 85,802 - Psyr_0079 0.46 -0.2 85,802 - Psyr_0079 0.46 +0.0 85,802 - Psyr_0079 0.46 +0.1 85,837 + Psyr_0079 0.49 +0.3 85,837 + Psyr_0079 0.49 -0.9 85,837 + Psyr_0079 0.49 +3.5 85,838 - Psyr_0079 0.49 -2.6 85,838 - Psyr_0079 0.49 +1.2 85,838 - Psyr_0079 0.49 +0.2 85,838 - Psyr_0079 0.49 +0.7 85,838 - Psyr_0079 0.49 -3.6 85,838 - Psyr_0079 0.49 +0.4 85,858 + Psyr_0079 0.51 -1.6 85,858 + Psyr_0079 0.51 -0.3 85,858 + Psyr_0079 0.51 -2.0 85,858 + Psyr_0079 0.51 -1.1 85,858 + Psyr_0079 0.51 +3.6 85,859 - Psyr_0079 0.51 -1.5 85,859 - Psyr_0079 0.51 -1.7 85,859 - Psyr_0079 0.51 -3.3 85,859 - Psyr_0079 0.51 -0.9 86,000 + Psyr_0079 0.62 -1.2 86,001 - Psyr_0079 0.62 +2.2 86,001 - Psyr_0079 0.62 +3.3 86,001 - Psyr_0079 0.62 -1.7 86,198 + Psyr_0079 0.78 -3.1 86,198 + Psyr_0079 0.78 +2.0 86,199 - Psyr_0079 0.78 -0.1 86,199 - Psyr_0079 0.78 -0.1 86,199 - Psyr_0079 0.78 +1.9 86,199 - Psyr_0079 0.78 +1.6 86,199 - Psyr_0079 0.78 +0.5 86,236 + Psyr_0079 0.81 -0.3 86,236 + Psyr_0079 0.81 -2.1 86,236 + Psyr_0079 0.81 +0.4 86,236 + Psyr_0079 0.81 -0.8 86,236 + Psyr_0079 0.81 -0.1 86,237 - Psyr_0079 0.81 +1.7 86,237 - Psyr_0079 0.81 -0.1 86,237 - Psyr_0079 0.81 -1.4 86,237 - Psyr_0079 0.81 -0.2 86,237 - Psyr_0079 0.81 +1.2 86,237 - Psyr_0079 0.81 -2.1 86,302 + Psyr_0079 0.86 +0.2 86,303 - Psyr_0079 0.86 -0.1 86,303 - Psyr_0079 0.86 -0.2 86,303 - Psyr_0079 0.86 -2.6 86,303 - Psyr_0079 0.86 +2.7 86,404 + +1.7 86,520 + -1.5 86,697 - Psyr_0080 0.28 +3.2 86,697 - Psyr_0080 0.28 +2.7 86,697 - Psyr_0080 0.28 +1.2 86,715 + Psyr_0080 0.30 +1.4 86,715 + Psyr_0080 0.30 +3.5 86,716 - Psyr_0080 0.31 -2.0 86,716 - Psyr_0080 0.31 -3.3 86,716 - Psyr_0080 0.31 -0.0 86,798 + Psyr_0080 0.41 +2.7 86,812 + Psyr_0080 0.42 -1.6 86,812 + Psyr_0080 0.42 +3.2 86,812 + Psyr_0080 0.42 -1.1 86,812 + Psyr_0080 0.42 +4.4 86,812 + Psyr_0080 0.42 +3.5 86,812 + Psyr_0080 0.42 -1.4 86,812 + Psyr_0080 0.42 +1.7 86,812 + Psyr_0080 0.42 +2.7 86,812 + Psyr_0080 0.42 -1.4 86,812 + Psyr_0080 0.42 +3.6 86,812 + Psyr_0080 0.42 -0.1 86,812 + Psyr_0080 0.42 +4.1 86,812 + Psyr_0080 0.42 +4.5 86,812 + Psyr_0080 0.42 +0.3 86,812 + Psyr_0080 0.42 -1.3 86,812 + Psyr_0080 0.42 -0.4 86,812 + Psyr_0080 0.42 +4.1 86,813 - Psyr_0080 0.42 -1.6 86,813 - Psyr_0080 0.42 +0.4 86,813 - Psyr_0080 0.42 -0.6 86,813 - Psyr_0080 0.42 +4.1 86,813 - Psyr_0080 0.42 -0.0 86,813 - Psyr_0080 0.42 +0.5 86,813 - Psyr_0080 0.42 -1.3 86,813 - Psyr_0080 0.42 +0.7 86,813 - Psyr_0080 0.42 +0.7 86,813 - Psyr_0080 0.42 +3.2 86,813 - Psyr_0080 0.42 +3.6 86,813 - Psyr_0080 0.42 +1.2 86,813 - Psyr_0080 0.42 +1.3 86,813 - Psyr_0080 0.42 -0.2 86,813 - Psyr_0080 0.42 +3.2 86,813 - Psyr_0080 0.42 -0.8 86,813 - Psyr_0080 0.42 +0.9 86,813 - Psyr_0080 0.42 +1.2 86,813 - Psyr_0080 0.42 +4.3 86,813 - Psyr_0080 0.42 -2.0 86,813 - Psyr_0080 0.42 -2.4 86,813 - Psyr_0080 0.42 -0.4 86,813 - Psyr_0080 0.42 -1.2 86,813 - Psyr_0080 0.42 +0.7 86,813 - Psyr_0080 0.42 +3.7 86,813 - Psyr_0080 0.42 -1.0 86,813 - Psyr_0080 0.42 -3.5 86,871 + Psyr_0080 0.50 -0.1 86,871 + Psyr_0080 0.50 -2.8 86,871 + Psyr_0080 0.50 +1.2 86,871 + Psyr_0080 0.50 +2.7 86,871 + Psyr_0080 0.50 -0.8 87,121 + Psyr_0080 0.80 -0.9 87,121 + Psyr_0080 0.80 -3.2 87,122 - Psyr_0080 0.80 -0.8 87,341 + -1.6 87,456 + +3.2 87,456 + +0.8 87,456 + -1.1 87,456 + +3.3 87,456 + +0.3 87,456 + -0.4 87,456 + +2.2 87,456 + +0.1 87,456 + -3.0 87,456 + -0.6 87,457 - +0.2 87,457 - +0.6 87,457 - +2.7 87,457 - +1.9 87,457 - +2.5 87,457 - -0.1 87,457 - +2.7 87,459 - -0.0 87,483 - +2.5 87,483 - -1.0 87,788 + Psyr_0081 0.31 -0.5 87,789 - Psyr_0081 0.31 -1.2
Or see this region's nucleotide sequence