Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1552

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1551 and Rru_A1552 are separated by 405 nucleotidesRru_A1552 and Rru_A1553 are separated by 370 nucleotidesRru_A1553 and Rru_AR0029 are separated by 284 nucleotides Rru_A1551: Rru_A1551 - ClpX, ATPase regulatory subunit (NCBI), at 1,828,668 to 1,829,936 _A1551 Rru_A1552: Rru_A1552 - Peptidase S16, ATP-dependent protease La (NCBI), at 1,830,342 to 1,832,762 _A1552 Rru_A1553: Rru_A1553 - Histone-like DNA-binding protein (NCBI), at 1,833,133 to 1,833,408 _A1553 Rru_AR0029: Rru_AR0029 - tRNA-Val (NCBI), at 1,833,693 to 1,833,768 _AR0029 Position (kb) 1830 1831 1832 1833Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1829.896 kb on - strandat 1829.937 kb on + strandat 1829.937 kb on + strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1830.084 kb on - strandat 1830.540 kb on + strandat 1830.756 kb on + strand, within Rru_A1552at 1830.757 kb on - strand, within Rru_A1552at 1830.837 kb on - strand, within Rru_A1552at 1831.215 kb on + strand, within Rru_A1552at 1831.319 kb on + strand, within Rru_A1552at 1831.528 kb on - strand, within Rru_A1552at 1831.717 kb on - strand, within Rru_A1552at 1831.938 kb on + strand, within Rru_A1552at 1832.657 kb on + strandat 1832.657 kb on + strandat 1832.658 kb on - strandat 1832.658 kb on - strandat 1832.760 kb on + strandat 1832.811 kb on + strandat 1833.107 kb on + strandat 1833.107 kb on + strandat 1833.496 kb on - strandat 1833.551 kb on + strandat 1833.551 kb on + strandat 1833.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,829,896 - +1.8
1,829,937 + +3.3
1,829,937 + +1.7
1,829,938 - -0.1
1,829,938 - -1.0
1,829,938 - +1.2
1,829,938 - +1.8
1,830,084 - +0.4
1,830,540 + -1.4
1,830,756 + Rru_A1552 0.17 -0.1
1,830,757 - Rru_A1552 0.17 -1.1
1,830,837 - Rru_A1552 0.20 -1.3
1,831,215 + Rru_A1552 0.36 +0.3
1,831,319 + Rru_A1552 0.40 -1.0
1,831,528 - Rru_A1552 0.49 -1.7
1,831,717 - Rru_A1552 0.57 -1.8
1,831,938 + Rru_A1552 0.66 -1.0
1,832,657 + -1.8
1,832,657 + +0.4
1,832,658 - -0.9
1,832,658 - -1.2
1,832,760 + +0.6
1,832,811 + -0.5
1,833,107 + +1.0
1,833,107 + +3.0
1,833,496 - +0.2
1,833,551 + -2.5
1,833,551 + -0.7
1,833,552 - -1.4

Or see this region's nucleotide sequence