Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18310 and ABZR87_RS18315 are separated by 96 nucleotides ABZR87_RS18315 and ABZR87_RS18320 overlap by 14 nucleotides ABZR87_RS18320 and ABZR87_RS18325 are separated by 7 nucleotides
ABZR87_RS18310: ABZR87_RS18310 - sulfonate ABC transporter substrate-binding protein, at 475,457 to 476,449
_RS18310
ABZR87_RS18315: ABZR87_RS18315 - DUF971 domain-containing protein, at 476,546 to 476,836
_RS18315
ABZR87_RS18320: ABZR87_RS18320 - HEAT repeat domain-containing protein, at 476,823 to 477,782
_RS18320
ABZR87_RS18325: ABZR87_RS18325 - ferredoxin family protein, at 477,790 to 478,056
_RS18325
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.777 kb on - strand, within ABZR87_RS18310 at 475.849 kb on - strand, within ABZR87_RS18310 at 475.852 kb on - strand, within ABZR87_RS18310 at 475.852 kb on - strand, within ABZR87_RS18310 at 475.852 kb on - strand, within ABZR87_RS18310 at 475.852 kb on - strand, within ABZR87_RS18310 at 475.923 kb on + strand, within ABZR87_RS18310 at 475.923 kb on + strand, within ABZR87_RS18310 at 475.983 kb on + strand, within ABZR87_RS18310 at 475.984 kb on - strand, within ABZR87_RS18310 at 476.109 kb on + strand, within ABZR87_RS18310 at 476.109 kb on + strand, within ABZR87_RS18310 at 476.109 kb on + strand, within ABZR87_RS18310 at 476.110 kb on - strand, within ABZR87_RS18310 at 476.110 kb on - strand, within ABZR87_RS18310 at 476.110 kb on - strand, within ABZR87_RS18310 at 476.110 kb on - strand, within ABZR87_RS18310 at 476.141 kb on + strand, within ABZR87_RS18310 at 476.164 kb on - strand, within ABZR87_RS18310 at 476.241 kb on + strand, within ABZR87_RS18310 at 476.241 kb on + strand, within ABZR87_RS18310 at 476.242 kb on - strand, within ABZR87_RS18310 at 476.428 kb on + strand at 476.487 kb on + strand at 476.487 kb on + strand at 476.532 kb on + strand at 476.532 kb on + strand at 476.558 kb on + strand at 476.558 kb on + strand at 476.558 kb on + strand at 476.592 kb on + strand, within ABZR87_RS18315 at 476.592 kb on + strand, within ABZR87_RS18315 at 476.592 kb on + strand, within ABZR87_RS18315 at 476.593 kb on - strand, within ABZR87_RS18315 at 477.077 kb on - strand, within ABZR87_RS18320 at 477.077 kb on - strand, within ABZR87_RS18320 at 477.478 kb on + strand, within ABZR87_RS18320 at 477.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 475,777 - ABZR87_RS18310 0.32 -1.6 475,849 - ABZR87_RS18310 0.39 -0.9 475,852 - ABZR87_RS18310 0.40 +0.3 475,852 - ABZR87_RS18310 0.40 +0.1 475,852 - ABZR87_RS18310 0.40 -0.6 475,852 - ABZR87_RS18310 0.40 +1.3 475,923 + ABZR87_RS18310 0.47 +0.8 475,923 + ABZR87_RS18310 0.47 -1.1 475,983 + ABZR87_RS18310 0.53 +1.1 475,984 - ABZR87_RS18310 0.53 +0.3 476,109 + ABZR87_RS18310 0.66 +0.1 476,109 + ABZR87_RS18310 0.66 -0.5 476,109 + ABZR87_RS18310 0.66 -0.4 476,110 - ABZR87_RS18310 0.66 -0.7 476,110 - ABZR87_RS18310 0.66 -1.2 476,110 - ABZR87_RS18310 0.66 -0.2 476,110 - ABZR87_RS18310 0.66 -0.9 476,141 + ABZR87_RS18310 0.69 -0.6 476,164 - ABZR87_RS18310 0.71 -0.2 476,241 + ABZR87_RS18310 0.79 +0.2 476,241 + ABZR87_RS18310 0.79 +1.5 476,242 - ABZR87_RS18310 0.79 -1.9 476,428 + -0.5 476,487 + +0.4 476,487 + +1.9 476,532 + +1.3 476,532 + -1.5 476,558 + +0.7 476,558 + +0.1 476,558 + -0.3 476,592 + ABZR87_RS18315 0.16 -0.1 476,592 + ABZR87_RS18315 0.16 +0.2 476,592 + ABZR87_RS18315 0.16 +0.3 476,593 - ABZR87_RS18315 0.16 +1.8 477,077 - ABZR87_RS18320 0.26 -2.9 477,077 - ABZR87_RS18320 0.26 +0.7 477,478 + ABZR87_RS18320 0.68 +0.9 477,803 + -0.3
Or see this region's nucleotide sequence