Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2711

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,291,525	-		Psyr_2710	0.46	+1.4
3,292,078	+				+0.8
3,292,079	-				-0.4
3,292,079	-				-0.8
3,292,085	-				+3.8
3,292,100	+				+0.8
3,292,100	+				+2.1
3,292,100	+				-1.1
3,292,100	+				-0.5
3,292,100	+				+1.4
3,292,101	-				+3.0
3,292,210	+		Psyr_2711	0.11	+1.4
3,292,226	+		Psyr_2711	0.12	+3.0
3,292,227	-		Psyr_2711	0.12	+2.4
3,292,358	+		Psyr_2711	0.19	-1.0
3,292,723	-		Psyr_2711	0.37	+2.8
3,292,723	-		Psyr_2711	0.37	+0.2
3,292,849	+		Psyr_2711	0.44	-2.7
3,292,849	+		Psyr_2711	0.44	-2.6
3,292,889	+		Psyr_2711	0.46	+3.5
3,293,067	+		Psyr_2711	0.55	-1.7
3,293,067	+		Psyr_2711	0.55	-1.3
3,293,067	+		Psyr_2711	0.55	-0.7
3,293,068	-		Psyr_2711	0.55	+3.4
3,293,147	-		Psyr_2711	0.59	+1.4
3,293,147	-		Psyr_2711	0.59	+1.7
3,293,331	+		Psyr_2711	0.68	-1.4
3,293,331	+		Psyr_2711	0.68	+3.0
3,293,332	-		Psyr_2711	0.68	-0.5
3,293,332	-		Psyr_2711	0.68	-0.9
3,293,372	-		Psyr_2711	0.70	-0.2
3,293,435	+		Psyr_2711	0.74	+0.6
3,293,435	+		Psyr_2711	0.74	+3.1
3,293,436	-		Psyr_2711	0.74	+1.4
3,293,436	-		Psyr_2711	0.74	+2.1
3,293,436	-		Psyr_2711	0.74	-1.2
3,293,436	-		Psyr_2711	0.74	+1.8
3,293,436	-		Psyr_2711	0.74	+3.1
3,293,443	+		Psyr_2711	0.74	+3.5
3,293,444	-		Psyr_2711	0.74	+1.1
3,293,581	+		Psyr_2711	0.81	-0.3
3,293,600	-		Psyr_2711	0.82	-0.3
3,293,707	-		Psyr_2711	0.87	+1.1
3,293,745	-		Psyr_2711	0.89	+3.6
3,293,822	+				+2.1
3,293,842	+				+0.6
3,293,842	+				+4.1
3,293,843	-				-1.7
3,293,843	-				+1.8
3,293,876	-				+3.0
3,294,023	+				+1.8
3,294,023	+				-2.4
3,294,023	+				+3.1
3,294,023	+				-0.1
3,294,023	+				-1.2
3,294,024	-				+2.4
3,294,024	-				+4.6
3,294,100	-				-0.2
3,294,109	-				-4.3
3,294,157	+				-3.1
3,294,157	+				+1.8
3,294,158	-				+3.6
3,294,158	-				-1.3
3,294,158	-				+2.1
3,294,158	-				+3.1
3,294,158	-				+0.3
3,294,310	+				-2.0
3,294,310	+				-1.0
3,294,505	+		Psyr_2712	0.28	+0.2
3,294,505	+		Psyr_2712	0.28	-0.2
3,294,505	+		Psyr_2712	0.28	-1.0
3,294,505	+		Psyr_2712	0.28	-1.1
3,294,505	+		Psyr_2712	0.28	-2.5
3,294,505	+		Psyr_2712	0.28	+2.6
3,294,505	+		Psyr_2712	0.28	-0.5
3,294,506	-		Psyr_2712	0.28	-0.2
3,294,506	-		Psyr_2712	0.28	+3.1
3,294,506	-		Psyr_2712	0.28	+3.6
3,294,506	-		Psyr_2712	0.28	+3.0
3,294,506	-		Psyr_2712	0.28	+4.5
3,294,524	-		Psyr_2712	0.31	-1.1
3,294,524	-		Psyr_2712	0.31	-0.8
3,294,583	+		Psyr_2712	0.39	+1.8
3,294,583	+		Psyr_2712	0.39	+0.1
3,294,583	+		Psyr_2712	0.39	-3.3
3,294,583	+		Psyr_2712	0.39	-1.4
3,294,583	+		Psyr_2712	0.39	+3.8
3,294,583	+		Psyr_2712	0.39	-1.6
3,294,583	+		Psyr_2712	0.39	+1.8
3,294,584	-		Psyr_2712	0.39	+3.8
3,294,584	-		Psyr_2712	0.39	+2.6
3,294,584	-		Psyr_2712	0.39	-0.2
3,294,584	-		Psyr_2712	0.39	+3.5
3,294,584	-		Psyr_2712	0.39	-0.0
3,294,643	+		Psyr_2712	0.48	+3.3
3,294,644	-		Psyr_2712	0.48	-1.3
3,294,644	-		Psyr_2712	0.48	+1.4
3,294,787	+		Psyr_2712	0.69	+2.8
3,294,787	+		Psyr_2712	0.69	-0.9
3,294,787	+		Psyr_2712	0.69	-0.4
3,294,787	+		Psyr_2712	0.69	-1.2
3,294,788	-		Psyr_2712	0.69	-0.8
3,294,788	-		Psyr_2712	0.69	+2.1
3,294,788	-		Psyr_2712	0.69	+1.8
3,294,788	-		Psyr_2712	0.69	+2.1
3,294,799	+		Psyr_2712	0.71	-1.8
3,294,799	+		Psyr_2712	0.71	-2.3
3,294,800	-		Psyr_2712	0.71	+0.8
3,294,800	-		Psyr_2712	0.71	-3.5
3,294,830	-		Psyr_2712	0.75	-1.5