Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0438

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0435 and Psyr_0436 overlap by 4 nucleotidesPsyr_0436 and Psyr_0437 are separated by 9 nucleotidesPsyr_0437 and Psyr_0438 overlap by 26 nucleotidesPsyr_0438 and Psyr_0439 overlap by 25 nucleotides Psyr_0435: Psyr_0435 - membrane protein, putative, at 474,481 to 475,026 _0435 Psyr_0436: Psyr_0436 - Phosphopantetheine-binding protein, at 475,023 to 475,277 _0436 Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547 _0437 Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334 _0438 Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029 _0439 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 474.661 kb on - strand, within Psyr_0435at 474.669 kb on - strand, within Psyr_0435at 475.049 kb on - strand, within Psyr_0436at 475.049 kb on - strand, within Psyr_0436at 475.059 kb on + strand, within Psyr_0436at 475.060 kb on - strand, within Psyr_0436at 475.460 kb on + strand, within Psyr_0437at 475.461 kb on - strand, within Psyr_0437at 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.572 kb on - strandat 475.572 kb on - strandat 475.584 kb on - strandat 475.584 kb on - strandat 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.919 kb on + strand, within Psyr_0438at 475.920 kb on - strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.288 kb on + strandat 476.288 kb on + strandat 476.289 kb on - strandat 476.289 kb on - strandat 476.291 kb on + strandat 476.291 kb on + strandat 476.527 kb on + strand, within Psyr_0439at 476.527 kb on + strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.615 kb on - strand, within Psyr_0439at 476.615 kb on - strand, within Psyr_0439at 477.066 kb on + strandat 477.067 kb on - strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.142 kb on - strandat 477.145 kb on - strandat 477.160 kb on + strandat 477.160 kb on + strandat 477.161 kb on - strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.182 kb on - strandat 477.182 kb on - strandat 477.256 kb on + strandat 477.257 kb on - strandat 477.267 kb on + strandat 477.268 kb on - strandat 477.268 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
474,661 - Psyr_0435 0.33 -1.9
474,669 - Psyr_0435 0.34 +2.7
475,049 - Psyr_0436 0.10 +5.1
475,049 - Psyr_0436 0.10 +0.1
475,059 + Psyr_0436 0.14 +1.7
475,060 - Psyr_0436 0.15 +3.8
475,460 + Psyr_0437 0.66 -2.1
475,461 - Psyr_0437 0.67 -0.8
475,523 + -1.1
475,523 + -1.7
475,523 + -1.3
475,523 + +4.1
475,523 + +1.1
475,523 + +3.3
475,571 + +1.7
475,571 + +2.5
475,571 + -1.1
475,571 + -1.4
475,571 + -1.2
475,571 + +5.4
475,571 + +2.5
475,571 + +0.3
475,572 - +2.1
475,572 - -0.6
475,584 - -1.4
475,584 - -1.4
475,645 + Psyr_0438 0.15 +0.4
475,645 + Psyr_0438 0.15 +2.1
475,645 + Psyr_0438 0.15 +2.9
475,646 - Psyr_0438 0.15 -1.0
475,646 - Psyr_0438 0.15 +0.1
475,646 - Psyr_0438 0.15 +1.7
475,646 - Psyr_0438 0.15 +2.5
475,646 - Psyr_0438 0.15 +3.1
475,646 - Psyr_0438 0.15 -2.2
475,919 + Psyr_0438 0.49 +3.9
475,920 - Psyr_0438 0.49 -1.9
476,093 + Psyr_0438 0.70 -1.9
476,093 + Psyr_0438 0.70 -2.0
476,093 + Psyr_0438 0.70 +0.3
476,093 + Psyr_0438 0.70 -1.7
476,093 + Psyr_0438 0.70 +1.7
476,093 + Psyr_0438 0.70 -0.6
476,093 + Psyr_0438 0.70 -0.6
476,093 + Psyr_0438 0.70 -2.9
476,093 + Psyr_0438 0.70 -1.1
476,093 + Psyr_0438 0.70 -1.4
476,094 - Psyr_0438 0.70 -2.9
476,094 - Psyr_0438 0.70 +0.2
476,094 - Psyr_0438 0.70 -0.9
476,094 - Psyr_0438 0.70 -0.3
476,288 + -0.8
476,288 + +4.4
476,289 - +0.1
476,289 - +3.3
476,291 + +0.1
476,291 + -2.3
476,527 + Psyr_0439 0.30 -0.5
476,527 + Psyr_0439 0.30 +3.7
476,566 - Psyr_0439 0.36 -0.3
476,566 - Psyr_0439 0.36 -1.4
476,566 - Psyr_0439 0.36 +0.1
476,614 + Psyr_0439 0.42 -2.2
476,614 + Psyr_0439 0.42 +0.1
476,614 + Psyr_0439 0.42 -0.2
476,614 + Psyr_0439 0.42 +2.1
476,614 + Psyr_0439 0.42 -1.1
476,615 - Psyr_0439 0.42 -0.4
476,615 - Psyr_0439 0.42 +4.3
477,066 + +0.5
477,067 - +4.7
477,141 + +0.6
477,141 + +0.1
477,141 + -0.7
477,142 - -0.8
477,145 - -1.2
477,160 + -0.3
477,160 + +0.1
477,161 - +1.8
477,181 + +2.1
477,181 + -2.3
477,181 + -1.9
477,181 + +3.5
477,182 - +1.1
477,182 - +2.9
477,256 + -0.3
477,257 - +1.1
477,267 + -1.9
477,268 - -0.6
477,268 - +2.5

Or see this region's nucleotide sequence