Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0345

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0344 and Psyr_0345 overlap by 4 nucleotidesPsyr_0345 and Psyr_0346 overlap by 4 nucleotides Psyr_0344: Psyr_0344 - Secretion protein HlyD, at 366,781 to 367,899 _0344 Psyr_0345: Psyr_0345 - Secretion protein HlyD, at 367,896 to 368,981 _0345 Psyr_0346: Psyr_0346 - Acriflavin resistance protein, at 368,978 to 372,079 _0346 Position (kb) 367 368 369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 367.177 kb on + strand, within Psyr_0344at 367.177 kb on + strand, within Psyr_0344at 367.178 kb on - strand, within Psyr_0344at 367.179 kb on + strand, within Psyr_0344at 367.180 kb on - strand, within Psyr_0344at 367.180 kb on - strand, within Psyr_0344at 367.180 kb on - strand, within Psyr_0344at 367.180 kb on - strand, within Psyr_0344at 367.195 kb on + strand, within Psyr_0344at 367.195 kb on + strand, within Psyr_0344at 367.195 kb on + strand, within Psyr_0344at 367.195 kb on + strand, within Psyr_0344at 367.196 kb on - strand, within Psyr_0344at 367.417 kb on + strand, within Psyr_0344at 367.418 kb on - strand, within Psyr_0344at 367.418 kb on - strand, within Psyr_0344at 367.515 kb on - strand, within Psyr_0344at 367.542 kb on + strand, within Psyr_0344at 367.700 kb on + strand, within Psyr_0344at 367.832 kb on + strandat 367.832 kb on + strandat 367.832 kb on + strandat 367.833 kb on - strandat 367.833 kb on - strandat 367.948 kb on + strandat 367.949 kb on - strandat 367.949 kb on - strandat 368.128 kb on + strand, within Psyr_0345at 368.129 kb on - strand, within Psyr_0345at 368.534 kb on + strand, within Psyr_0345at 368.566 kb on + strand, within Psyr_0345at 368.566 kb on + strand, within Psyr_0345at 368.567 kb on - strand, within Psyr_0345at 368.654 kb on + strand, within Psyr_0345at 368.654 kb on + strand, within Psyr_0345at 368.654 kb on + strand, within Psyr_0345at 368.655 kb on - strand, within Psyr_0345at 368.655 kb on - strand, within Psyr_0345at 368.655 kb on - strand, within Psyr_0345at 368.723 kb on - strand, within Psyr_0345at 368.850 kb on - strand, within Psyr_0345at 369.035 kb on + strandat 369.036 kb on - strandat 369.074 kb on + strandat 369.224 kb on + strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.236 kb on + strandat 369.236 kb on + strandat 369.236 kb on + strandat 369.236 kb on + strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.237 kb on - strandat 369.239 kb on - strandat 369.269 kb on + strandat 369.269 kb on + strandat 369.269 kb on + strandat 369.270 kb on - strandat 369.270 kb on - strandat 369.315 kb on - strand, within Psyr_0346at 369.405 kb on - strand, within Psyr_0346at 369.416 kb on + strand, within Psyr_0346at 369.416 kb on + strand, within Psyr_0346at 369.416 kb on + strand, within Psyr_0346at 369.417 kb on - strand, within Psyr_0346at 369.417 kb on - strand, within Psyr_0346at 369.417 kb on - strand, within Psyr_0346at 369.417 kb on - strand, within Psyr_0346at 369.461 kb on + strand, within Psyr_0346at 369.461 kb on + strand, within Psyr_0346at 369.461 kb on + strand, within Psyr_0346at 369.462 kb on - strand, within Psyr_0346at 369.462 kb on - strand, within Psyr_0346at 369.462 kb on - strand, within Psyr_0346at 369.545 kb on + strand, within Psyr_0346at 369.545 kb on + strand, within Psyr_0346at 369.546 kb on - strand, within Psyr_0346at 369.898 kb on + strand, within Psyr_0346at 369.898 kb on + strand, within Psyr_0346at 369.898 kb on + strand, within Psyr_0346at 369.898 kb on + strand, within Psyr_0346at 369.899 kb on - strand, within Psyr_0346at 369.899 kb on - strand, within Psyr_0346at 369.899 kb on - strand, within Psyr_0346at 369.899 kb on - strand, within Psyr_0346at 369.899 kb on - strand, within Psyr_0346at 369.907 kb on + strand, within Psyr_0346at 369.908 kb on - strand, within Psyr_0346

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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367,177 + Psyr_0344 0.35 -2.0
367,177 + Psyr_0344 0.35 +1.1
367,178 - Psyr_0344 0.35 -1.6
367,179 + Psyr_0344 0.36 -1.3
367,180 - Psyr_0344 0.36 +0.3
367,180 - Psyr_0344 0.36 +1.7
367,180 - Psyr_0344 0.36 +0.0
367,180 - Psyr_0344 0.36 +3.3
367,195 + Psyr_0344 0.37 +1.7
367,195 + Psyr_0344 0.37 -0.9
367,195 + Psyr_0344 0.37 -0.7
367,195 + Psyr_0344 0.37 +0.4
367,196 - Psyr_0344 0.37 -0.9
367,417 + Psyr_0344 0.57 -3.3
367,418 - Psyr_0344 0.57 -1.8
367,418 - Psyr_0344 0.57 -1.2
367,515 - Psyr_0344 0.66 +0.6
367,542 + Psyr_0344 0.68 +3.7
367,700 + Psyr_0344 0.82 -1.1
367,832 + +3.7
367,832 + +0.1
367,832 + -2.4
367,833 - -0.9
367,833 - -0.9
367,948 + -1.0
367,949 - -4.0
367,949 - -3.9
368,128 + Psyr_0345 0.21 +3.7
368,129 - Psyr_0345 0.21 -1.1
368,534 + Psyr_0345 0.59 +2.7
368,566 + Psyr_0345 0.62 +2.5
368,566 + Psyr_0345 0.62 +1.1
368,567 - Psyr_0345 0.62 +2.5
368,654 + Psyr_0345 0.70 -1.0
368,654 + Psyr_0345 0.70 -1.4
368,654 + Psyr_0345 0.70 -2.0
368,655 - Psyr_0345 0.70 -1.1
368,655 - Psyr_0345 0.70 -1.3
368,655 - Psyr_0345 0.70 +0.6
368,723 - Psyr_0345 0.76 +2.5
368,850 - Psyr_0345 0.88 +1.6
369,035 + +1.0
369,036 - +3.1
369,074 + -2.4
369,224 + +2.1
369,225 - +0.3
369,225 - +0.9
369,225 - +0.1
369,225 - -3.3
369,236 + -0.1
369,236 + -0.9
369,236 + -0.1
369,236 + -2.4
369,237 - -0.1
369,237 - +0.8
369,237 - +3.5
369,237 - -1.0
369,237 - +0.9
369,237 - +0.5
369,237 - -0.5
369,239 - -0.9
369,269 + +4.0
369,269 + +0.1
369,269 + +1.7
369,270 - +3.1
369,270 - -1.5
369,315 - Psyr_0346 0.11 -1.9
369,405 - Psyr_0346 0.14 +2.5
369,416 + Psyr_0346 0.14 -0.9
369,416 + Psyr_0346 0.14 +3.8
369,416 + Psyr_0346 0.14 -1.6
369,417 - Psyr_0346 0.14 -0.1
369,417 - Psyr_0346 0.14 -0.2
369,417 - Psyr_0346 0.14 -0.2
369,417 - Psyr_0346 0.14 -1.7
369,461 + Psyr_0346 0.16 +0.1
369,461 + Psyr_0346 0.16 +0.9
369,461 + Psyr_0346 0.16 +0.1
369,462 - Psyr_0346 0.16 -2.1
369,462 - Psyr_0346 0.16 +0.1
369,462 - Psyr_0346 0.16 -0.9
369,545 + Psyr_0346 0.18 -0.1
369,545 + Psyr_0346 0.18 -0.9
369,546 - Psyr_0346 0.18 -1.0
369,898 + Psyr_0346 0.30 +3.3
369,898 + Psyr_0346 0.30 -0.5
369,898 + Psyr_0346 0.30 +1.3
369,898 + Psyr_0346 0.30 -2.1
369,899 - Psyr_0346 0.30 -0.8
369,899 - Psyr_0346 0.30 +0.3
369,899 - Psyr_0346 0.30 +0.3
369,899 - Psyr_0346 0.30 +1.0
369,899 - Psyr_0346 0.30 +3.7
369,907 + Psyr_0346 0.30 +4.7
369,908 - Psyr_0346 0.30 +2.9

Or see this region's nucleotide sequence