Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2569 and Dsui_2570 are separated by 95 nucleotides Dsui_2570 and Dsui_2571 are separated by 327 nucleotides Dsui_2571 and Dsui_2572 overlap by 14 nucleotides
Dsui_2569: Dsui_2569 - hypothetical protein, at 2,719,220 to 2,719,855
_2569
Dsui_2570: Dsui_2570 - hypothetical protein, at 2,719,951 to 2,720,448
_2570
Dsui_2571: Dsui_2571 - hypothetical protein, at 2,720,776 to 2,721,468
_2571
Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548
_2572
Position (kb)
2720
2721
2722 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2719.781 kb on + strand, within Dsui_2569 at 2719.784 kb on - strand, within Dsui_2569 at 2719.794 kb on - strand at 2719.794 kb on - strand at 2719.805 kb on + strand at 2719.805 kb on + strand at 2719.805 kb on + strand at 2719.805 kb on + strand at 2719.805 kb on - strand at 2719.810 kb on + strand at 2719.813 kb on - strand at 2719.813 kb on - strand at 2719.815 kb on + strand at 2719.815 kb on + strand at 2719.822 kb on + strand at 2719.822 kb on + strand at 2719.822 kb on + strand at 2719.830 kb on - strand at 2719.830 kb on - strand at 2719.863 kb on + strand at 2719.878 kb on + strand at 2719.881 kb on + strand at 2719.885 kb on + strand at 2719.911 kb on + strand at 2719.931 kb on + strand at 2719.959 kb on + strand at 2719.961 kb on + strand at 2719.975 kb on + strand at 2719.977 kb on - strand at 2719.987 kb on - strand at 2719.998 kb on + strand at 2720.001 kb on - strand, within Dsui_2570 at 2720.006 kb on - strand, within Dsui_2570 at 2720.011 kb on - strand, within Dsui_2570 at 2720.015 kb on - strand, within Dsui_2570 at 2720.040 kb on + strand, within Dsui_2570 at 2720.040 kb on + strand, within Dsui_2570 at 2720.048 kb on - strand, within Dsui_2570 at 2720.078 kb on - strand, within Dsui_2570 at 2720.089 kb on - strand, within Dsui_2570 at 2720.124 kb on + strand, within Dsui_2570 at 2720.160 kb on + strand, within Dsui_2570 at 2720.161 kb on + strand, within Dsui_2570 at 2720.161 kb on + strand, within Dsui_2570 at 2720.161 kb on + strand, within Dsui_2570 at 2720.161 kb on + strand, within Dsui_2570 at 2720.175 kb on + strand, within Dsui_2570 at 2720.183 kb on - strand, within Dsui_2570 at 2720.183 kb on - strand, within Dsui_2570 at 2720.220 kb on - strand, within Dsui_2570 at 2720.220 kb on - strand, within Dsui_2570 at 2720.221 kb on - strand, within Dsui_2570 at 2720.255 kb on - strand, within Dsui_2570 at 2720.256 kb on + strand, within Dsui_2570 at 2720.266 kb on + strand, within Dsui_2570 at 2720.284 kb on - strand, within Dsui_2570 at 2720.287 kb on - strand, within Dsui_2570 at 2720.302 kb on - strand, within Dsui_2570 at 2720.307 kb on - strand, within Dsui_2570 at 2720.343 kb on - strand, within Dsui_2570 at 2720.344 kb on + strand, within Dsui_2570 at 2720.352 kb on + strand, within Dsui_2570 at 2720.352 kb on - strand, within Dsui_2570 at 2720.360 kb on - strand, within Dsui_2570 at 2720.370 kb on - strand, within Dsui_2570 at 2720.377 kb on - strand, within Dsui_2570 at 2720.377 kb on - strand, within Dsui_2570 at 2720.417 kb on - strand at 2720.443 kb on + strand at 2720.471 kb on + strand at 2720.520 kb on + strand at 2720.528 kb on - strand at 2720.530 kb on + strand at 2720.540 kb on + strand at 2720.559 kb on - strand at 2720.648 kb on + strand at 2720.658 kb on + strand at 2720.658 kb on + strand at 2720.663 kb on + strand at 2720.664 kb on + strand at 2720.668 kb on + strand at 2720.671 kb on - strand at 2720.671 kb on - strand at 2720.671 kb on - strand at 2720.671 kb on - strand at 2720.673 kb on + strand at 2720.674 kb on + strand at 2720.674 kb on + strand at 2720.681 kb on - strand at 2720.681 kb on - strand at 2720.737 kb on + strand at 2720.738 kb on - strand at 2720.738 kb on - strand at 2720.738 kb on - strand at 2720.744 kb on + strand at 2720.752 kb on - strand at 2720.764 kb on + strand at 2720.774 kb on + strand at 2720.779 kb on + strand at 2720.781 kb on - strand at 2720.787 kb on - strand at 2720.787 kb on - strand at 2720.787 kb on - strand at 2720.787 kb on - strand at 2720.844 kb on + strand at 2720.852 kb on - strand, within Dsui_2571 at 2720.890 kb on - strand, within Dsui_2571 at 2720.890 kb on - strand, within Dsui_2571 at 2720.905 kb on + strand at 2720.913 kb on - strand, within Dsui_2571 at 2720.964 kb on - strand, within Dsui_2571 at 2720.993 kb on + strand, within Dsui_2571 at 2720.999 kb on - strand, within Dsui_2571 at 2721.001 kb on - strand, within Dsui_2571 at 2721.078 kb on + strand, within Dsui_2571 at 2721.097 kb on - strand, within Dsui_2571 at 2721.164 kb on - strand, within Dsui_2571 at 2721.200 kb on + strand, within Dsui_2571 at 2721.235 kb on + strand, within Dsui_2571 at 2721.249 kb on + strand, within Dsui_2571 at 2721.257 kb on - strand, within Dsui_2571 at 2721.300 kb on + strand, within Dsui_2571 at 2721.300 kb on + strand, within Dsui_2571 at 2721.308 kb on - strand, within Dsui_2571 at 2721.308 kb on - strand, within Dsui_2571 at 2721.308 kb on - strand, within Dsui_2571 at 2721.308 kb on - strand, within Dsui_2571 at 2721.325 kb on - strand, within Dsui_2571 at 2721.404 kb on + strand at 2721.424 kb on - strand at 2721.440 kb on - strand at 2721.440 kb on - strand at 2721.489 kb on + strand at 2721.489 kb on + strand at 2721.497 kb on - strand at 2721.507 kb on - strand at 2721.535 kb on - strand at 2721.594 kb on - strand at 2721.626 kb on + strand at 2721.626 kb on + strand at 2721.634 kb on - strand at 2721.660 kb on + strand at 2721.783 kb on - strand, within Dsui_2572 at 2721.809 kb on + strand, within Dsui_2572 at 2721.829 kb on - strand, within Dsui_2572 at 2721.857 kb on + strand, within Dsui_2572 at 2721.895 kb on - strand, within Dsui_2572 at 2721.920 kb on - strand, within Dsui_2572 at 2721.925 kb on - strand, within Dsui_2572 at 2722.067 kb on + strand, within Dsui_2572 at 2722.068 kb on + strand, within Dsui_2572 at 2722.145 kb on + strand, within Dsui_2572 at 2722.177 kb on - strand, within Dsui_2572 at 2722.213 kb on - strand, within Dsui_2572 at 2722.215 kb on + strand, within Dsui_2572 at 2722.224 kb on + strand, within Dsui_2572 at 2722.261 kb on - strand, within Dsui_2572 at 2722.358 kb on - strand, within Dsui_2572 at 2722.398 kb on - strand, within Dsui_2572 at 2722.400 kb on - strand, within Dsui_2572 at 2722.462 kb on + strand, within Dsui_2572
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 2,719,781 + Dsui_2569 0.88 +0.8 2,719,784 - Dsui_2569 0.89 -0.3 2,719,794 - -0.5 2,719,794 - +0.1 2,719,805 + -0.8 2,719,805 + -0.5 2,719,805 + -0.3 2,719,805 + -0.4 2,719,805 - -0.0 2,719,810 + +0.3 2,719,813 - +0.4 2,719,813 - -0.1 2,719,815 + +0.2 2,719,815 + +0.6 2,719,822 + +0.1 2,719,822 + +0.4 2,719,822 + +0.0 2,719,830 - -0.1 2,719,830 - -0.9 2,719,863 + -0.0 2,719,878 + -0.1 2,719,881 + +0.1 2,719,885 + +0.1 2,719,911 + +0.5 2,719,931 + -3.6 2,719,959 + -0.4 2,719,961 + -0.2 2,719,975 + -0.5 2,719,977 - +0.2 2,719,987 - +0.0 2,719,998 + -0.6 2,720,001 - Dsui_2570 0.10 -0.0 2,720,006 - Dsui_2570 0.11 -0.1 2,720,011 - Dsui_2570 0.12 -0.0 2,720,015 - Dsui_2570 0.13 -0.1 2,720,040 + Dsui_2570 0.18 +0.8 2,720,040 + Dsui_2570 0.18 -0.5 2,720,048 - Dsui_2570 0.19 +0.0 2,720,078 - Dsui_2570 0.26 -0.2 2,720,089 - Dsui_2570 0.28 +0.0 2,720,124 + Dsui_2570 0.35 -3.0 2,720,160 + Dsui_2570 0.42 +0.6 2,720,161 + Dsui_2570 0.42 -0.0 2,720,161 + Dsui_2570 0.42 -0.1 2,720,161 + Dsui_2570 0.42 +0.4 2,720,161 + Dsui_2570 0.42 -0.2 2,720,175 + Dsui_2570 0.45 +0.0 2,720,183 - Dsui_2570 0.47 +0.3 2,720,183 - Dsui_2570 0.47 +1.5 2,720,220 - Dsui_2570 0.54 -0.4 2,720,220 - Dsui_2570 0.54 +0.3 2,720,221 - Dsui_2570 0.54 +0.1 2,720,255 - Dsui_2570 0.61 -0.4 2,720,256 + Dsui_2570 0.61 -1.1 2,720,266 + Dsui_2570 0.63 +0.7 2,720,284 - Dsui_2570 0.67 -1.0 2,720,287 - Dsui_2570 0.67 +0.2 2,720,302 - Dsui_2570 0.70 +0.3 2,720,307 - Dsui_2570 0.71 -0.3 2,720,343 - Dsui_2570 0.79 -0.0 2,720,344 + Dsui_2570 0.79 +0.9 2,720,352 + Dsui_2570 0.81 -0.0 2,720,352 - Dsui_2570 0.81 -0.8 2,720,360 - Dsui_2570 0.82 -0.1 2,720,370 - Dsui_2570 0.84 -0.2 2,720,377 - Dsui_2570 0.86 -0.3 2,720,377 - Dsui_2570 0.86 -0.1 2,720,417 - +0.0 2,720,443 + +0.2 2,720,471 + +0.6 2,720,520 + +0.8 2,720,528 - -1.0 2,720,530 + +0.4 2,720,540 + +0.7 2,720,559 - -0.4 2,720,648 + -1.3 2,720,658 + -0.0 2,720,658 + -0.1 2,720,663 + +0.2 2,720,664 + -0.5 2,720,668 + +0.2 2,720,671 - +1.4 2,720,671 - -0.4 2,720,671 - +0.3 2,720,671 - -0.0 2,720,673 + +1.8 2,720,674 + +0.3 2,720,674 + -2.4 2,720,681 - +0.4 2,720,681 - +0.4 2,720,737 + +0.2 2,720,738 - -0.2 2,720,738 - +0.5 2,720,738 - +0.2 2,720,744 + -0.3 2,720,752 - +0.1 2,720,764 + +1.8 2,720,774 + +0.9 2,720,779 + -1.7 2,720,781 - +0.5 2,720,787 - -0.6 2,720,787 - +0.4 2,720,787 - +0.5 2,720,787 - -0.1 2,720,844 + +1.5 2,720,852 - Dsui_2571 0.11 -0.2 2,720,890 - Dsui_2571 0.16 +1.2 2,720,890 - Dsui_2571 0.16 -0.1 2,720,905 + +0.2 2,720,913 - Dsui_2571 0.20 -0.1 2,720,964 - Dsui_2571 0.27 -0.5 2,720,993 + Dsui_2571 0.31 +0.2 2,720,999 - Dsui_2571 0.32 -1.0 2,721,001 - Dsui_2571 0.32 -0.1 2,721,078 + Dsui_2571 0.44 -0.4 2,721,097 - Dsui_2571 0.46 +0.3 2,721,164 - Dsui_2571 0.56 -0.5 2,721,200 + Dsui_2571 0.61 +1.0 2,721,235 + Dsui_2571 0.66 +3.4 2,721,249 + Dsui_2571 0.68 -1.2 2,721,257 - Dsui_2571 0.69 +0.6 2,721,300 + Dsui_2571 0.76 +0.5 2,721,300 + Dsui_2571 0.76 -1.3 2,721,308 - Dsui_2571 0.77 -0.0 2,721,308 - Dsui_2571 0.77 -1.4 2,721,308 - Dsui_2571 0.77 -1.4 2,721,308 - Dsui_2571 0.77 -2.5 2,721,325 - Dsui_2571 0.79 -1.4 2,721,404 + +0.1 2,721,424 - -0.8 2,721,440 - +0.2 2,721,440 - +0.8 2,721,489 + +0.8 2,721,489 + +0.3 2,721,497 - +1.2 2,721,507 - -0.1 2,721,535 - +0.1 2,721,594 - -0.1 2,721,626 + +0.1 2,721,626 + -0.1 2,721,634 - +0.2 2,721,660 + -1.7 2,721,783 - Dsui_2572 0.16 +0.5 2,721,809 + Dsui_2572 0.17 +0.2 2,721,829 - Dsui_2572 0.18 +0.0 2,721,857 + Dsui_2572 0.19 -0.9 2,721,895 - Dsui_2572 0.21 +0.2 2,721,920 - Dsui_2572 0.22 +0.1 2,721,925 - Dsui_2572 0.22 +0.6 2,722,067 + Dsui_2572 0.29 -0.6 2,722,068 + Dsui_2572 0.29 +0.4 2,722,145 + Dsui_2572 0.33 +1.2 2,722,177 - Dsui_2572 0.34 -0.6 2,722,213 - Dsui_2572 0.36 +0.2 2,722,215 + Dsui_2572 0.36 -0.0 2,722,224 + Dsui_2572 0.37 -0.4 2,722,261 - Dsui_2572 0.38 +1.2 2,722,358 - Dsui_2572 0.43 -0.9 2,722,398 - Dsui_2572 0.45 -0.5 2,722,400 - Dsui_2572 0.45 -1.0 2,722,462 + Dsui_2572 0.48 +0.2
Or see this region's nucleotide sequence