Strain Fitness in Dechlorosoma suillum PS around Dsui_2571

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2569 and Dsui_2570 are separated by 95 nucleotidesDsui_2570 and Dsui_2571 are separated by 327 nucleotidesDsui_2571 and Dsui_2572 overlap by 14 nucleotides Dsui_2569: Dsui_2569 - hypothetical protein, at 2,719,220 to 2,719,855 _2569 Dsui_2570: Dsui_2570 - hypothetical protein, at 2,719,951 to 2,720,448 _2570 Dsui_2571: Dsui_2571 - hypothetical protein, at 2,720,776 to 2,721,468 _2571 Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548 _2572 Position (kb) 2720 2721 2722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2719.781 kb on + strand, within Dsui_2569at 2719.784 kb on - strand, within Dsui_2569at 2719.794 kb on - strandat 2719.794 kb on - strandat 2719.805 kb on + strandat 2719.805 kb on + strandat 2719.805 kb on + strandat 2719.805 kb on + strandat 2719.805 kb on - strandat 2719.810 kb on + strandat 2719.813 kb on - strandat 2719.813 kb on - strandat 2719.815 kb on + strandat 2719.815 kb on + strandat 2719.822 kb on + strandat 2719.822 kb on + strandat 2719.822 kb on + strandat 2719.830 kb on - strandat 2719.830 kb on - strandat 2719.863 kb on + strandat 2719.878 kb on + strandat 2719.881 kb on + strandat 2719.885 kb on + strandat 2719.911 kb on + strandat 2719.931 kb on + strandat 2719.959 kb on + strandat 2719.961 kb on + strandat 2719.975 kb on + strandat 2719.977 kb on - strandat 2719.987 kb on - strandat 2719.998 kb on + strandat 2720.001 kb on - strand, within Dsui_2570at 2720.006 kb on - strand, within Dsui_2570at 2720.011 kb on - strand, within Dsui_2570at 2720.015 kb on - strand, within Dsui_2570at 2720.040 kb on + strand, within Dsui_2570at 2720.040 kb on + strand, within Dsui_2570at 2720.048 kb on - strand, within Dsui_2570at 2720.078 kb on - strand, within Dsui_2570at 2720.089 kb on - strand, within Dsui_2570at 2720.124 kb on + strand, within Dsui_2570at 2720.160 kb on + strand, within Dsui_2570at 2720.161 kb on + strand, within Dsui_2570at 2720.161 kb on + strand, within Dsui_2570at 2720.161 kb on + strand, within Dsui_2570at 2720.161 kb on + strand, within Dsui_2570at 2720.175 kb on + strand, within Dsui_2570at 2720.183 kb on - strand, within Dsui_2570at 2720.183 kb on - strand, within Dsui_2570at 2720.220 kb on - strand, within Dsui_2570at 2720.220 kb on - strand, within Dsui_2570at 2720.221 kb on - strand, within Dsui_2570at 2720.255 kb on - strand, within Dsui_2570at 2720.256 kb on + strand, within Dsui_2570at 2720.266 kb on + strand, within Dsui_2570at 2720.284 kb on - strand, within Dsui_2570at 2720.287 kb on - strand, within Dsui_2570at 2720.302 kb on - strand, within Dsui_2570at 2720.307 kb on - strand, within Dsui_2570at 2720.343 kb on - strand, within Dsui_2570at 2720.344 kb on + strand, within Dsui_2570at 2720.352 kb on + strand, within Dsui_2570at 2720.352 kb on - strand, within Dsui_2570at 2720.360 kb on - strand, within Dsui_2570at 2720.370 kb on - strand, within Dsui_2570at 2720.377 kb on - strand, within Dsui_2570at 2720.377 kb on - strand, within Dsui_2570at 2720.417 kb on - strandat 2720.443 kb on + strandat 2720.471 kb on + strandat 2720.520 kb on + strandat 2720.528 kb on - strandat 2720.530 kb on + strandat 2720.540 kb on + strandat 2720.559 kb on - strandat 2720.648 kb on + strandat 2720.658 kb on + strandat 2720.658 kb on + strandat 2720.663 kb on + strandat 2720.664 kb on + strandat 2720.668 kb on + strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.673 kb on + strandat 2720.674 kb on + strandat 2720.674 kb on + strandat 2720.681 kb on - strandat 2720.681 kb on - strandat 2720.737 kb on + strandat 2720.738 kb on - strandat 2720.738 kb on - strandat 2720.738 kb on - strandat 2720.744 kb on + strandat 2720.752 kb on - strandat 2720.764 kb on + strandat 2720.774 kb on + strandat 2720.779 kb on + strandat 2720.781 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.844 kb on + strandat 2720.852 kb on - strand, within Dsui_2571at 2720.890 kb on - strand, within Dsui_2571at 2720.890 kb on - strand, within Dsui_2571at 2720.905 kb on + strandat 2720.913 kb on - strand, within Dsui_2571at 2720.964 kb on - strand, within Dsui_2571at 2720.993 kb on + strand, within Dsui_2571at 2720.999 kb on - strand, within Dsui_2571at 2721.001 kb on - strand, within Dsui_2571at 2721.078 kb on + strand, within Dsui_2571at 2721.097 kb on - strand, within Dsui_2571at 2721.164 kb on - strand, within Dsui_2571at 2721.200 kb on + strand, within Dsui_2571at 2721.235 kb on + strand, within Dsui_2571at 2721.249 kb on + strand, within Dsui_2571at 2721.257 kb on - strand, within Dsui_2571at 2721.300 kb on + strand, within Dsui_2571at 2721.300 kb on + strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.325 kb on - strand, within Dsui_2571at 2721.404 kb on + strandat 2721.424 kb on - strandat 2721.440 kb on - strandat 2721.440 kb on - strandat 2721.489 kb on + strandat 2721.489 kb on + strandat 2721.497 kb on - strandat 2721.507 kb on - strandat 2721.535 kb on - strandat 2721.594 kb on - strandat 2721.626 kb on + strandat 2721.626 kb on + strandat 2721.634 kb on - strandat 2721.660 kb on + strandat 2721.783 kb on - strand, within Dsui_2572at 2721.809 kb on + strand, within Dsui_2572at 2721.829 kb on - strand, within Dsui_2572at 2721.857 kb on + strand, within Dsui_2572at 2721.895 kb on - strand, within Dsui_2572at 2721.920 kb on - strand, within Dsui_2572at 2721.925 kb on - strand, within Dsui_2572at 2722.067 kb on + strand, within Dsui_2572at 2722.068 kb on + strand, within Dsui_2572at 2722.145 kb on + strand, within Dsui_2572at 2722.177 kb on - strand, within Dsui_2572at 2722.213 kb on - strand, within Dsui_2572at 2722.215 kb on + strand, within Dsui_2572at 2722.224 kb on + strand, within Dsui_2572at 2722.261 kb on - strand, within Dsui_2572at 2722.358 kb on - strand, within Dsui_2572at 2722.398 kb on - strand, within Dsui_2572at 2722.400 kb on - strand, within Dsui_2572at 2722.462 kb on + strand, within Dsui_2572

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
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2,719,781 + Dsui_2569 0.88 +0.8
2,719,784 - Dsui_2569 0.89 -0.3
2,719,794 - -0.5
2,719,794 - +0.1
2,719,805 + -0.8
2,719,805 + -0.5
2,719,805 + -0.3
2,719,805 + -0.4
2,719,805 - -0.0
2,719,810 + +0.3
2,719,813 - +0.4
2,719,813 - -0.1
2,719,815 + +0.2
2,719,815 + +0.6
2,719,822 + +0.1
2,719,822 + +0.4
2,719,822 + +0.0
2,719,830 - -0.1
2,719,830 - -0.9
2,719,863 + -0.0
2,719,878 + -0.1
2,719,881 + +0.1
2,719,885 + +0.1
2,719,911 + +0.5
2,719,931 + -3.6
2,719,959 + -0.4
2,719,961 + -0.2
2,719,975 + -0.5
2,719,977 - +0.2
2,719,987 - +0.0
2,719,998 + -0.6
2,720,001 - Dsui_2570 0.10 -0.0
2,720,006 - Dsui_2570 0.11 -0.1
2,720,011 - Dsui_2570 0.12 -0.0
2,720,015 - Dsui_2570 0.13 -0.1
2,720,040 + Dsui_2570 0.18 +0.8
2,720,040 + Dsui_2570 0.18 -0.5
2,720,048 - Dsui_2570 0.19 +0.0
2,720,078 - Dsui_2570 0.26 -0.2
2,720,089 - Dsui_2570 0.28 +0.0
2,720,124 + Dsui_2570 0.35 -3.0
2,720,160 + Dsui_2570 0.42 +0.6
2,720,161 + Dsui_2570 0.42 -0.0
2,720,161 + Dsui_2570 0.42 -0.1
2,720,161 + Dsui_2570 0.42 +0.4
2,720,161 + Dsui_2570 0.42 -0.2
2,720,175 + Dsui_2570 0.45 +0.0
2,720,183 - Dsui_2570 0.47 +0.3
2,720,183 - Dsui_2570 0.47 +1.5
2,720,220 - Dsui_2570 0.54 -0.4
2,720,220 - Dsui_2570 0.54 +0.3
2,720,221 - Dsui_2570 0.54 +0.1
2,720,255 - Dsui_2570 0.61 -0.4
2,720,256 + Dsui_2570 0.61 -1.1
2,720,266 + Dsui_2570 0.63 +0.7
2,720,284 - Dsui_2570 0.67 -1.0
2,720,287 - Dsui_2570 0.67 +0.2
2,720,302 - Dsui_2570 0.70 +0.3
2,720,307 - Dsui_2570 0.71 -0.3
2,720,343 - Dsui_2570 0.79 -0.0
2,720,344 + Dsui_2570 0.79 +0.9
2,720,352 + Dsui_2570 0.81 -0.0
2,720,352 - Dsui_2570 0.81 -0.8
2,720,360 - Dsui_2570 0.82 -0.1
2,720,370 - Dsui_2570 0.84 -0.2
2,720,377 - Dsui_2570 0.86 -0.3
2,720,377 - Dsui_2570 0.86 -0.1
2,720,417 - +0.0
2,720,443 + +0.2
2,720,471 + +0.6
2,720,520 + +0.8
2,720,528 - -1.0
2,720,530 + +0.4
2,720,540 + +0.7
2,720,559 - -0.4
2,720,648 + -1.3
2,720,658 + -0.0
2,720,658 + -0.1
2,720,663 + +0.2
2,720,664 + -0.5
2,720,668 + +0.2
2,720,671 - +1.4
2,720,671 - -0.4
2,720,671 - +0.3
2,720,671 - -0.0
2,720,673 + +1.8
2,720,674 + +0.3
2,720,674 + -2.4
2,720,681 - +0.4
2,720,681 - +0.4
2,720,737 + +0.2
2,720,738 - -0.2
2,720,738 - +0.5
2,720,738 - +0.2
2,720,744 + -0.3
2,720,752 - +0.1
2,720,764 + +1.8
2,720,774 + +0.9
2,720,779 + -1.7
2,720,781 - +0.5
2,720,787 - -0.6
2,720,787 - +0.4
2,720,787 - +0.5
2,720,787 - -0.1
2,720,844 + +1.5
2,720,852 - Dsui_2571 0.11 -0.2
2,720,890 - Dsui_2571 0.16 +1.2
2,720,890 - Dsui_2571 0.16 -0.1
2,720,905 + +0.2
2,720,913 - Dsui_2571 0.20 -0.1
2,720,964 - Dsui_2571 0.27 -0.5
2,720,993 + Dsui_2571 0.31 +0.2
2,720,999 - Dsui_2571 0.32 -1.0
2,721,001 - Dsui_2571 0.32 -0.1
2,721,078 + Dsui_2571 0.44 -0.4
2,721,097 - Dsui_2571 0.46 +0.3
2,721,164 - Dsui_2571 0.56 -0.5
2,721,200 + Dsui_2571 0.61 +1.0
2,721,235 + Dsui_2571 0.66 +3.4
2,721,249 + Dsui_2571 0.68 -1.2
2,721,257 - Dsui_2571 0.69 +0.6
2,721,300 + Dsui_2571 0.76 +0.5
2,721,300 + Dsui_2571 0.76 -1.3
2,721,308 - Dsui_2571 0.77 -0.0
2,721,308 - Dsui_2571 0.77 -1.4
2,721,308 - Dsui_2571 0.77 -1.4
2,721,308 - Dsui_2571 0.77 -2.5
2,721,325 - Dsui_2571 0.79 -1.4
2,721,404 + +0.1
2,721,424 - -0.8
2,721,440 - +0.2
2,721,440 - +0.8
2,721,489 + +0.8
2,721,489 + +0.3
2,721,497 - +1.2
2,721,507 - -0.1
2,721,535 - +0.1
2,721,594 - -0.1
2,721,626 + +0.1
2,721,626 + -0.1
2,721,634 - +0.2
2,721,660 + -1.7
2,721,783 - Dsui_2572 0.16 +0.5
2,721,809 + Dsui_2572 0.17 +0.2
2,721,829 - Dsui_2572 0.18 +0.0
2,721,857 + Dsui_2572 0.19 -0.9
2,721,895 - Dsui_2572 0.21 +0.2
2,721,920 - Dsui_2572 0.22 +0.1
2,721,925 - Dsui_2572 0.22 +0.6
2,722,067 + Dsui_2572 0.29 -0.6
2,722,068 + Dsui_2572 0.29 +0.4
2,722,145 + Dsui_2572 0.33 +1.2
2,722,177 - Dsui_2572 0.34 -0.6
2,722,213 - Dsui_2572 0.36 +0.2
2,722,215 + Dsui_2572 0.36 -0.0
2,722,224 + Dsui_2572 0.37 -0.4
2,722,261 - Dsui_2572 0.38 +1.2
2,722,358 - Dsui_2572 0.43 -0.9
2,722,398 - Dsui_2572 0.45 -0.5
2,722,400 - Dsui_2572 0.45 -1.0
2,722,462 + Dsui_2572 0.48 +0.2

Or see this region's nucleotide sequence